Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005365.1 Kokia drynarioides strain JFW-HI SEQ_119347, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3990
ACGTcount: A:0.42, C:0.08, G:0.17, T:0.34


Found at i:3167 original size:15 final size:14

Alignment explanation


    Indices: 3142--3172  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 14

       3132 TAAGTAGATG

                          
       3142 AAAAAATATAATAA
          1 AAAAAATATAATAA

                           
       3156 AAAAAATAATAATAA
          1 AAAAAAT-ATAATAA

              
       3171 AA
          1 AA

       3173 CTTGTGGGTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    7  0.44
  15    9  0.56

ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19


Consensus pattern (14 bp):   
AAAAAATATAATAA
Done.