genome.fa.s5379.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01005379.1 Kokia drynarioides strain JFW-HI SEQ_119366, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  153210

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5239--5297	22	2.6	23	75	15	59	64	3	1	30	1.20
5426--5478	14	3.8	14	97	0	97	35	13	1	49	1.53
8600--8651	14	3.8	13	80	7	59	59	5	1	32	1.32
8854--8897	18	2.5	17	82	13	54	38	2	6	52	1.41
12227--12269	18	2.4	18	80	7	52	46	2	0	51	1.13
12608--12651	19	2.4	19	85	11	56	56	9	2	31	1.43
18786--18831	23	2.0	23	83	8	58	50	2	10	36	1.50
19441--19504	29	2.3	27	83	8	74	50	3	1	45	1.27
20202--20570	185	2.0	185	88	2	553	40	11	15	32	1.83
25016--25063	21	2.3	21	89	3	71	41	16	12	29	1.85
30896--31198	59	5.2	59	89	1	439	38	19	4	37	1.72
30934--31085	10	17.7	9	66	24	62	40	19	3	37	1.68
30938--31012	24	3.1	25	75	21	79	37	21	5	36	1.76
30985--31136	10	15.4	10	67	20	72	39	19	2	38	1.65
30917--31198	117	2.4	117	89	2	433	38	19	3	37	1.69
31161--31208	10	4.7	10	84	2	51	37	20	4	37	1.72
34714--34796	39	2.1	39	86	0	112	38	19	2	39	1.65
34778--34816	10	3.8	10	86	3	51	38	23	2	35	1.68
37289--37422	68	2.0	68	86	4	191	31	8	8	50	1.64
40278--40472	60	3.2	60	82	2	239	31	12	22	33	1.91
47511--47721	60	3.5	60	80	2	226	31	12	21	34	1.91
49295--49329	13	2.7	13	86	0	52	45	2	8	42	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51888--51937	17	2.9	17	80	14	57	52	12	18	18	1.75
60522--60570	18	2.8	16	77	17	53	53	14	20	12	1.73
68518--68553	20	1.9	20	88	11	58	69	0	5	25	1.10
69006--69089	39	2.1	39	84	4	105	28	17	27	26	1.98
69063--69114	25	2.1	25	89	7	79	30	23	28	17	1.97
69089--69183	41	2.3	41	87	0	136	35	22	25	16	1.95
69229--69268	20	2.0	20	85	0	53	50	2	2	45	1.28
72655--72966	43	7.3	43	82	2	369	27	18	25	29	1.98
72655--72954	85	3.5	85	82	2	368	27	18	25	28	1.98
72665--72971	128	2.4	128	84	3	377	28	17	24	29	1.98
75627--75670	19	2.3	19	100	0	88	36	29	18	15	1.92
77167--77326	79	2.0	79	87	2	232	21	16	27	34	1.95
77170--77363	79	2.4	78	80	3	226	21	18	26	34	1.96
78986--79012	14	1.9	14	100	0	54	22	7	25	44	1.79
82071--82124	18	3.1	18	76	13	58	31	18	9	40	1.82
88901--88945	20	2.2	20	96	0	81	40	17	28	13	1.88
98030--98079	19	2.5	20	83	6	57	46	20	12	22	1.83
98747--98880	40	3.4	40	89	1	189	25	24	7	42	1.80
103898--104023	27	4.7	27	82	0	135	25	17	19	38	1.93
103898--104022	54	2.3	54	83	5	162	25	17	18	38	1.92
103919--104042	54	2.3	54	81	5	135	26	18	19	35	1.95
104885--104994	45	2.4	46	78	7	116	21	28	4	45	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104828--105175	173	2.0	174	94	0	608	31	25	4	38	1.76
105049--105168	45	2.6	48	79	9	133	23	28	3	45	1.69
108749--109241	23	21.3	23	87	0	626	46	14	5	33	1.68
109227--109300	10	7.5	10	76	3	78	44	22	2	29	1.67
109278--109427	59	2.6	59	84	2	187	38	18	6	37	1.77
109509--109645	66	2.1	66	86	2	186	40	29	13	17	1.87
109851--109958	36	3.0	36	90	1	164	40	24	8	26	1.83
112072--112151	30	2.7	30	82	0	97	37	26	13	22	1.91
112340--112398	30	2.0	30	93	0	100	44	25	15	15	1.85
114030--114066	17	2.2	17	90	0	56	35	18	5	40	1.74
116433--116472	19	2.1	19	90	0	62	25	10	5	60	1.49
123974--124072	35	2.8	36	83	6	121	49	12	8	30	1.69
127323--127374	22	2.3	21	78	12	50	7	17	0	75	1.03
129033--129067	17	2.0	18	88	5	54	0	28	0	71	0.86
132996--133607	207	3.0	207	93	1	1056	21	23	17	38	1.93
141630--141680	20	2.5	20	84	6	59	31	9	9	49	1.69
141649--141694	20	2.3	19	82	17	58	32	6	4	56	1.45
142171--142243	36	2.0	37	83	2	94	47	9	8	34	1.66
142181--142280	37	2.7	37	83	4	105	49	11	10	30	1.71
145194--145218	5	5.0	5	100	0	50	80	0	20	0	0.72
145839--145885	20	2.2	22	81	7	62	38	6	4	51	1.47

Tables:   1

The End!