Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005386.1 Kokia drynarioides strain JFW-HI SEQ_119381, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 902

Length: 1504
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.36


Found at i:316 original size:17 final size:17

Alignment explanation


    Indices: 275--363  Score: 63
    Period size: 17  Copynumber: 5.1  Consensus size: 17

        265 AATTATCACA

                  *  *       
        275 ATTTTTTAACTATAATT
          1 ATTTTTAAATTATAATT

               *        *     
        292 ATAATTTAAATTCTAATT
          1 AT-TTTTAAATTATAATT

                        *  ** 
        310 ATTTTTAAATGTGTACCT
          1 ATTTTTAAAT-TATAATT

               *             
        328 -TTATTAAATTATAATT
          1 ATTTTTAAATTATAATT

                          *   
        344 ATTTTTAAATGTATGATT
          1 ATTTTTAAAT-TATAATT

              
        362 AT
          1 AT

        364 AAAAAAAATG


Statistics
Matches: 54,  Mismatches: 14, Indels: 7
        0.72            0.19        0.09

Matches are distributed among these distances:
  16    4  0.07
  17   25  0.46
  18   25  0.46

ACGTcount: A:0.37, C:0.04, G:0.04, T:0.54


Consensus pattern (17 bp):   
ATTTTTAAATTATAATT
Done.