genome.fa.s5395.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01005395.1 Kokia drynarioides strain JFW-HI SEQ_119400, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  224582

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7--36	2	15.0	2	100	0	60	50	0	50	0	1.00
4743--4950	106	2.0	106	88	4	294	45	7	7	40	1.59
10909--11002	27	3.5	27	80	0	80	24	13	21	40	1.89
11026--11197	25	6.8	25	82	0	200	25	15	25	34	1.95
11017--11197	75	2.4	76	85	6	233	25	15	23	35	1.94
11159--11213	26	2.1	26	83	6	67	32	12	25	29	1.93
12885--12967	24	3.4	24	88	3	112	22	22	15	38	1.92
28182--28445	133	2.0	133	92	1	440	39	14	18	26	1.90
28493--28573	24	3.4	24	91	0	126	20	24	18	35	1.95
31163--31215	21	2.5	21	96	0	97	18	39	30	11	1.86
34984--35074	39	2.3	39	98	1	173	24	27	17	30	1.97
45749--45857	55	2.0	55	85	3	148	32	17	21	29	1.96
45895--45977	38	2.2	38	88	0	130	26	20	22	30	1.98
45907--45995	38	2.3	38	86	7	119	26	19	24	29	1.98
47139--47185	22	2.2	22	88	3	69	65	10	6	17	1.43
53652--53697	18	2.6	18	86	3	67	63	13	6	17	1.50
53656--53706	18	2.6	19	78	12	59	62	11	7	17	1.51
53673--53718	21	2.0	23	84	12	60	58	13	6	21	1.57
68316--68348	17	1.9	17	93	0	57	3	18	0	78	0.87
82447--82505	29	2.0	29	100	0	118	37	20	23	18	1.94
84149--84222	21	3.5	21	96	1	130	17	6	9	66	1.42
95734--95777	20	2.2	20	84	4	54	52	9	0	38	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95533--96160	148	4.2	148	85	4	802	43	9	3	43	1.54
96119--96218	20	5.2	19	73	15	73	49	11	1	39	1.45
96565--96605	3	14.0	3	94	5	75	65	0	0	34	0.93
96604--96638	3	11.7	3	100	0	70	68	0	31	0	0.90
100237--100278	21	2.0	21	90	0	66	28	26	11	33	1.92
102343--102374	14	2.3	14	100	0	64	40	28	9	21	1.84
103935--104097	36	4.5	36	88	0	227	26	16	22	34	1.95
103936--104134	72	2.8	72	83	1	193	27	16	20	35	1.94
103942--104143	108	1.9	108	85	2	280	27	15	20	36	1.93
103935--104173	108	2.2	108	81	3	275	27	15	21	35	1.94
110665--110727	32	2.0	32	93	0	108	46	15	7	30	1.75
113198--113244	24	2.0	25	91	8	80	14	6	12	65	1.44
115377--115486	58	1.9	58	96	0	202	15	16	19	49	1.80
116295--116353	29	2.0	30	93	3	102	45	16	8	28	1.77
116305--116374	29	2.3	29	88	9	97	41	17	8	32	1.79
126410--126450	16	2.6	16	80	0	55	31	2	0	65	1.05
132459--132492	17	1.9	18	88	5	52	67	2	8	20	1.31
137582--137867	55	5.2	55	82	3	317	23	12	27	36	1.91
137560--137865	109	2.8	110	81	6	361	23	13	25	36	1.92
139145--139378	127	1.8	127	87	3	346	36	17	14	31	1.90
147031--147072	9	4.7	9	80	11	50	26	9	21	42	1.83
148563--148629	35	1.9	35	87	0	98	28	8	14	47	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148618--148770	46	3.3	46	87	1	227	35	18	14	31	1.91
152292--152326	18	2.1	17	89	10	54	54	5	17	22	1.64
154822--155008	84	2.3	81	85	6	234	50	23	11	14	1.74
154822--155008	28	6.8	27	79	1	144	50	23	11	14	1.74
154958--155026	26	2.7	26	86	0	93	46	24	13	15	1.82
155019--155203	57	3.4	56	75	11	161	40	23	14	22	1.90
155066--155163	51	1.9	52	87	2	144	43	25	13	17	1.85
155126--155256	28	4.6	29	80	7	144	40	21	10	27	1.86
155136--155256	29	4.2	29	81	7	149	39	19	10	29	1.86
155140--155252	57	2.0	56	89	5	174	41	18	11	28	1.85
155361--155578	56	3.9	56	87	4	305	26	26	13	33	1.93
164927--164965	17	2.3	18	86	8	55	61	0	0	38	0.96
167495--167559	33	2.0	33	81	6	78	46	3	3	47	1.33
168927--168997	29	2.3	32	76	9	78	33	2	9	53	1.49
176690--176898	109	1.9	108	82	8	264	39	13	13	33	1.83
178697--178741	24	2.0	22	86	8	63	60	0	8	31	1.28
178695--178741	23	2.1	22	84	4	58	61	0	8	29	1.25
180507--180664	84	1.9	84	82	0	199	24	19	20	35	1.96
180718--180772	26	2.1	25	83	9	74	20	20	18	41	1.90
182712--182780	30	2.3	29	85	7	86	33	23	15	27	1.95
185528--185561	17	2.0	17	100	0	68	23	17	5	52	1.66
187443--187489	22	2.1	22	84	0	58	38	17	2	42	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187528--187582	27	2.0	28	82	10	69	29	14	9	47	1.75
190100--190353	45	5.7	45	79	8	241	30	26	18	24	1.98
190788--190823	17	2.1	17	89	0	54	80	11	0	8	0.90
191728--191783	28	2.0	28	92	3	94	41	0	19	39	1.52
191740--191811	30	2.5	28	80	8	72	37	2	22	37	1.69
192888--192921	13	2.6	13	85	0	50	61	2	5	29	1.34
193854--194021	85	2.0	85	85	2	230	25	21	14	38	1.92
193854--194231	209	1.8	209	86	2	553	23	21	16	38	1.92
194261--194372	40	2.9	38	70	13	93	27	15	19	37	1.92
196511--196543	3	11.0	3	93	0	57	0	30	0	69	0.88
199650--199681	12	2.8	12	95	4	57	25	0	0	75	0.81
201427--201453	9	3.0	9	100	0	54	44	11	44	0	1.39
205128--205290	29	5.7	29	76	5	143	36	1	25	36	1.67
205138--205363	58	3.9	58	74	12	162	36	2	23	37	1.67
205128--205310	29	6.3	28	76	8	136	37	1	24	37	1.65
206408--206441	13	2.6	13	85	0	50	61	2	8	26	1.40
208739--208764	3	8.7	3	100	0	52	30	0	0	69	0.89
213645--213678	17	2.0	17	94	0	59	38	44	0	17	1.49
214585--214771	98	1.9	98	89	0	293	35	18	11	34	1.86
219703--219802	17	5.7	18	67	15	57	67	1	1	31	1.04
219648--219802	53	2.9	53	76	17	160	65	1	1	31	1.12
220128--220206	30	2.6	30	90	7	117	49	12	3	34	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
221165--221199	6	5.7	6	86	6	52	65	2	0	31	1.07
221165--221199	13	2.8	13	91	4	54	65	2	0	31	1.07

Tables:   1

The End!