Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005397.1 Kokia drynarioides strain JFW-HI SEQ_119402, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1840
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.37


Found at i:271 original size:38 final size:38

Alignment explanation


    Indices: 201--273  Score: 94
    Period size: 38  Copynumber: 1.9  Consensus size: 38

        191 ACTCGATTTT

                             *    * *             
        201 TTATTTTGTCCTAAATTTGTACTTGAACTTTTTTTCAA
          1 TTATTTTGTCCTAAATTGGTACCTAAACTTTTTTTCAA

                                        *       
        239 TTATTTTGTCC-AAGATTGGTACCTAAAGTTTTTTT
          1 TTATTTTGTCCTAA-ATTGGTACCTAAACTTTTTTT

        274 GTCCCAGATT


Statistics
Matches: 30,  Mismatches: 4, Indels: 2
        0.83            0.11        0.06

Matches are distributed among these distances:
  37    2  0.07
  38   28  0.93

ACGTcount: A:0.23, C:0.12, G:0.11, T:0.53


Consensus pattern (38 bp):   
TTATTTTGTCCTAAATTGGTACCTAAACTTTTTTTCAA

Found at i:298 original size:28 final size:28

Alignment explanation


    Indices: 242--301  Score: 77
    Period size: 28  Copynumber: 2.1  Consensus size: 28

        232 TTTTCAATTA

                                    *   
        242 TTTTGTCCAAGATTGGTACCTAAAGTTT
          1 TTTTGTCCAAGATTGGTACCTAAACTTT

                    *             *      
        270 TTTTGTCCCAGATTGGTA-CTCGAACTTT
          1 TTTTGTCCAAGATTGGTACCT-AAACTTT

                
        298 TTTT
          1 TTTT

        302 CCCGTCCACT


Statistics
Matches: 28,  Mismatches: 3, Indels: 2
        0.85            0.09        0.06

Matches are distributed among these distances:
  27    2  0.07
  28   26  0.93

ACGTcount: A:0.20, C:0.17, G:0.17, T:0.47


Consensus pattern (28 bp):   
TTTTGTCCAAGATTGGTACCTAAACTTT
Done.