Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005399.1 Kokia drynarioides strain JFW-HI SEQ_119404, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10461
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.35


Found at i:7172 original size:11 final size:11

Alignment explanation


    Indices: 7156--7185  Score: 60
    Period size: 11  Copynumber: 2.7  Consensus size: 11

       7146 TTTTGCACAT

                       
       7156 AAAGCAAAATG
          1 AAAGCAAAATG

                       
       7167 AAAGCAAAATG
          1 AAAGCAAAATG

                    
       7178 AAAGCAAA
          1 AAAGCAAA

       7186 TAAAGGCTCA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   19  1.00

ACGTcount: A:0.67, C:0.10, G:0.17, T:0.07


Consensus pattern (11 bp):   
AAAGCAAAATG
Done.