Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000054.1 Kokia drynarioides strain JFW-HI SEQ_110581, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 829

Length: 1383
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.37


Found at i:252 original size:87 final size:87

Alignment explanation


    Indices: 88--393  Score: 407
    Period size: 87  Copynumber: 3.5  Consensus size: 87

         78 GGATAACCTA

                                              *    *    **             * *   
         88 ACATGATCATTCTGATTCTGATTAGCTGACGA-CATAAATGTTCCAACCGAGCTCCTGCTTATGT
          1 ACATGATCATTCTGATTCTGATTAGCTGACGAGCGTAAACGTTCTGACCGAGCTCCTGCATGTGT

                                 *
        152 TGCGAACTCGGGTTATTATGAT
         66 TGCGAACTCGGGTTATTATGAG

               *  *      *     *                                     *       
        174 ACACGACCATTCTAATTCTTATTAGCTGACGAGCGTAAACGTTCTGACCGAGCTCCTACATGTGT
          1 ACATGATCATTCTGATTCTGATTAGCTGACGAGCGTAAACGTTCTGACCGAGCTCCTGCATGTGT

             *                    
        239 TACGAACTCGGGTTATTATGAG
         66 TGCGAACTCGGGTTATTATGAG

                       *     *       *                            **       **
        261 ACATGATCATTTTGATTTTGATTAGTTGACGAGCGTAAACGTTCTGACCGAGCTATTGCATGTCC
          1 ACATGATCATTCTGATTCTGATTAGCTGACGAGCGTAAACGTTCTGACCGAGCTCCTGCATGTGT

                *                 
        326 TGCGGACTCGGGTTATTATGAG
         66 TGCGAACTCGGGTTATTATGAG

                   *                                      
        348 ACATGATTATTCTGATTCTGATTAGCTGACGAGCGTAAACGTTCTG
          1 ACATGATCATTCTGATTCTGATTAGCTGACGAGCGTAAACGTTCTG

        394 GACTTAAGTA


Statistics
Matches: 188,  Mismatches: 31, Indels: 1
        0.85            0.14        0.00

Matches are distributed among these distances:
  86   28  0.15
  87  160  0.85

ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33


Consensus pattern (87 bp):   
ACATGATCATTCTGATTCTGATTAGCTGACGAGCGTAAACGTTCTGACCGAGCTCCTGCATGTGT
TGCGAACTCGGGTTATTATGAG
Done.