Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000540.1 Kokia drynarioides strain JFW-HI SEQ_111439, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3823
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.35


Found at i:2527 original size:29 final size:29

Alignment explanation


    Indices: 2477--2558  Score: 74
    Period size: 29  Copynumber: 2.7  Consensus size: 29

       2467 CCGAAAAACA

                   *    *  *             
       2477 AAAGAAAAAAACAAAAAACTAAAACTAAG
          1 AAAGAAATAAACTAAGAACTAAAACTAAG

                             *     **    
       2506 AAAGAAATAAACTAAGACCTAAATTTAAG
          1 AAAGAAATAAACTAAGAACTAAAACTAAG

                                    
       2535 AAAGGAAAATTAAACTAAGTAACT
          1 AAA-G-AAA-TAAACTAAG-AACT

       2559 GGTGTGTGTA


Statistics
Matches: 42,  Mismatches: 7, Indels: 4
        0.79            0.13        0.08

Matches are distributed among these distances:
  29   26  0.62
  30    1  0.02
  31    3  0.07
  32    9  0.21
  33    3  0.07

ACGTcount: A:0.65, C:0.10, G:0.10, T:0.16


Consensus pattern (29 bp):   
AAAGAAATAAACTAAGAACTAAAACTAAG
Done.