Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01005403.1 Kokia drynarioides strain JFW-HI SEQ_119411, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26371
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Warning! 63 characters in sequence are not A, C, G, or T
Found at i:380 original size:29 final size:29
Alignment explanation
Indices: 348--759 Score: 391
Period size: 30 Copynumber: 14.0 Consensus size: 29
338 AATCGAGGTC
* * *
348 AAAAATGGGATTTTTGAAAGTCTAAGGGT
1 AAAAATGGGATTTTTGGAAGTTTTAGGGT
*
377 AAAAATGGGATTTTTGGAAG-TTTCGAGGT
1 AAAAATGGGATTTTTGGAAGTTTTAG-GGT
**
406 CAAAAATGGGATTTTTGGAAGTTTGGGGGT
1 -AAAAATGGGATTTTTGGAAGTTTTAGGGT
**** ** * *
436 AAAAACAAAATTTTTATACAGTTTAAGGAT
1 AAAAATGGGATTTTTGGA-AGTTTTAGGGT
** *
466 CAAAAATGGGATTTTTGGAAGTTCGAGGGGA
1 -AAAAATGGGATTTTTGGAAGTTTTA-GGGT
* *
497 AAAAATGGGATTTATGGAAGTTTTGGGGT
1 AAAAATGGGATTTTTGGAAGTTTTAGGGT
*
526 CAAAAATGGGATTTTTGGAAGTTTAAGGGT
1 -AAAAATGGGATTTTTGGAAGTTTTAGGGT
* *
556 AAAAATGGAATTTTTGGAAG-TTTCGAGGT
1 AAAAATGGGATTTTTGGAAGTTTTAG-GGT
*
585 CAAAAATGGGATTTTTGGAAGTTTGAGGGT
1 -AAAAATGGGATTTTTGGAAGTTTTAGGGT
*
615 -AAAATGGGATTTTTTGAAGTTTTAGGGTT
1 AAAAATGGGATTTTTGGAAGTTTTAGGG-T
***
644 AAAAATGGGATTTTTGGAAGTTCGGGGGT
1 AAAAATGGGATTTTTGGAAGTTTTAGGGT
* *
673 AAAAATGGAATTTTTGGAAGTTTTGGGGT
1 AAAAATGGGATTTTTGGAAGTTTTAGGGT
* **
702 CAAAAATTGGATTTTTGGAAGTTCGAGGGT
1 -AAAAATGGGATTTTTGGAAGTTTTAGGGT
* *
732 AAAAATAGAATTTTTGGACAG-TTTAGGG
1 AAAAATGGGATTTTTGGA-AGTTTTAGGG
760 ACCTCCGAGG
Statistics
Matches: 312, Mismatches: 57, Indels: 28
0.79 0.14 0.07
Matches are distributed among these distances:
28 30 0.10
29 108 0.35
30 154 0.49
31 20 0.06
ACGTcount: A:0.33, C:0.03, G:0.30, T:0.34
Consensus pattern (29 bp):
AAAAATGGGATTTTTGGAAGTTTTAGGGT
Found at i:403 original size:59 final size:59
Alignment explanation
Indices: 340--755 Score: 505
Period size: 59 Copynumber: 7.0 Consensus size: 59
330 TTGGGAAAAA
* * * *
340 TCGAGGTCAAAAATGGGATTTTTGAAAGTCTAAGGGTAAAAATGGGATTTTTGGAAGTT
1 TCGAGGTCAAAAATGGGATTTTTGGAAGTTTGAGGGTAAAAATGGAATTTTTGGAAGTT
* *** **
399 TCGAGGTCAAAAATGGGATTTTTGGAAGTTTGGGGGTAAAAACAAAATTTTTATACAGTT
1 TCGAGGTCAAAAATGGGATTTTTGGAAGTTTGAGGGTAAAAATGGAATTTTTGGA-AGTT
* * * * *
459 T-AAGGATCAAAAATGGGATTTTTGGAAGTTCGAGGGGAAAAAATGGGATTTATGGAAGTT
1 TCGAGG-TCAAAAATGGGATTTTTGGAAGTTTGA-GGGTAAAAATGGAATTTTTGGAAGTT
* * *
519 TTGGGGTCAAAAATGGGATTTTTGGAAGTTTAAGGGTAAAAATGGAATTTTTGGAAGTT
1 TCGAGGTCAAAAATGGGATTTTTGGAAGTTTGAGGGTAAAAATGGAATTTTTGGAAGTT
* *
578 TCGAGGTCAAAAATGGGATTTTTGGAAGTTTGAGGGT-AAAATGGGATTTTTTGAAGTT
1 TCGAGGTCAAAAATGGGATTTTTGGAAGTTTGAGGGTAAAAATGGAATTTTTGGAAGTT
* * * *
636 T-TAGGGTTAAAAATGGGATTTTTGGAAGTTCGGGGGTAAAAATGGAATTTTTGGAAGTT
1 TCGA-GGTCAAAAATGGGATTTTTGGAAGTTTGAGGGTAAAAATGGAATTTTTGGAAGTT
* * * * *
695 TTGGGGTCAAAAATTGGATTTTTGGAAGTTCGAGGGTAAAAATAGAATTTTTGGACAGTT
1 TCGAGGTCAAAAATGGGATTTTTGGAAGTTTGAGGGTAAAAATGGAATTTTTGGA-AGTT
755 T
1 T
756 AGGGACCTCC
Statistics
Matches: 304, Mismatches: 45, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
57 1 0.00
58 50 0.16
59 172 0.57
60 65 0.21
61 16 0.05
ACGTcount: A:0.33, C:0.04, G:0.30, T:0.34
Consensus pattern (59 bp):
TCGAGGTCAAAAATGGGATTTTTGGAAGTTTGAGGGTAAAAATGGAATTTTTGGAAGTT
Found at i:2701 original size:6 final size:6
Alignment explanation
Indices: 2687--2734 Score: 64
Period size: 6 Copynumber: 8.3 Consensus size: 6
2677 ATTTGGAAAA
* *
2687 TAAATT TAAACT TAAA-T TAAATT TAAATT T-AATA TAAATT TAAATT
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT
2733 TA
1 TA
2735 TACACAAATT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
5 9 0.24
6 28 0.76
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (6 bp):
TAAATT
Found at i:2733 original size:17 final size:17
Alignment explanation
Indices: 2655--2765 Score: 100
Period size: 17 Copynumber: 6.4 Consensus size: 17
2645 CCATATTTAT
*
2655 TTTAAATTTATAAT-AA
1 TTTAAATTTAAAATAAA
2671 TCTTAAATTTGGAAAATAAA
1 T-TTAAATTT--AAAATAAA
* *
2691 TTTAAACTTAAATTAAA
1 TTTAAATTTAAAATAAA
*
2708 TTTAAATTTAATATAAA
1 TTTAAATTTAAAATAAA
* *
2725 TTTAAATTTATACACAAA
1 TTTAAATTTA-AAATAAA
*
2743 TTT-ATTCTTAAAATAAA
1 TTTAAAT-TTAAAATAAA
2760 TTTAAA
1 TTTAAA
2766 GGGAGTTTGG
Statistics
Matches: 76, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
16 1 0.01
17 49 0.64
18 12 0.16
19 11 0.14
20 3 0.04
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (17 bp):
TTTAAATTTAAAATAAA
Found at i:3408 original size:96 final size:96
Alignment explanation
Indices: 3234--3425 Score: 230
Period size: 96 Copynumber: 2.0 Consensus size: 96
3224 ATTTTGAGAA
* ** * *
3234 AAGGATATTCGATTATCTCGATTTGAAGAAAGGTTGCACCTAGTAAGTTAAGTCGCAATATTTCA
1 AAGGATATTCGATTATCTCAATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAATATTTCA
*
3299 GAATCGAAGATAAAGA-AACATTGCCTCGATT
66 GAATCGAAGATAAA-ATAACATTACCTCGATT
* * *
3330 AAGGGTATTCGATTATTTTAATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAA-ATTTTC
1 AAGGATATTCGATTATCTCAATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAATA-TTTC
*
3394 -GAAACTCGAA-ATAAAATAATATTACCTCGATT
65 AG-AA-TCGAAGATAAAATAACATTACCTCGATT
3426 TTAAAGTCTT
Statistics
Matches: 82, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
95 3 0.04
96 74 0.90
97 5 0.06
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.31
Consensus pattern (96 bp):
AAGGATATTCGATTATCTCAATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAATATTTCA
GAATCGAAGATAAAATAACATTACCTCGATT
Found at i:3763 original size:28 final size:27
Alignment explanation
Indices: 3716--3824 Score: 85
Period size: 28 Copynumber: 3.8 Consensus size: 27
3706 GGGGAAGTTT
*
3716 GAGGTTAAAAGATGAAATTTTTGGACATCC
1 GAGG-TAAAA-ATGGAATTTTTGGACAT-C
* *
3746 GAGGTAAAAATGGAA-TTTTCGAAAGTTTC
1 GAGGTAAAAATGGAATTTTTGGACA---TC
*
3775 GAGATCAAAAATGGAATTTTTGGACATC
1 GAGGT-AAAAATGGAATTTTTGGACATC
* *
3803 TAGGGAAAAATGGTAATTTTTG
1 GAGGTAAAAATGG-AATTTTTG
3825 AAAGTTTTGG
Statistics
Matches: 64, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
27 15 0.23
28 17 0.27
29 10 0.16
30 15 0.23
31 7 0.11
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (27 bp):
GAGGTAAAAATGGAATTTTTGGACATC
Found at i:3772 original size:58 final size:57
Alignment explanation
Indices: 3710--3853 Score: 173
Period size: 58 Copynumber: 2.5 Consensus size: 57
3700 AACTTTGGGG
* *
3710 AAGTTTGAGGTTAAAAGATGAAATTTTTGGACATCCGAGGTAAAAATGG-AATTTTCGA
1 AAGTTTGAGGTCAAAA-ATGAAATTTTTGGACAT-CGAGGGAAAAATGGTAATTTTCGA
* * * *
3768 AAGTTTCGAGATCAAAAATGGAATTTTTGGACATCTAGGGAAAAATGGTAATTTTTGA
1 AAGTTT-GAGGTCAAAAATGAAATTTTTGGACATCGAGGGAAAAATGGTAATTTTCGA
*
3826 AAGTTTTGGGGTCAAAAATGGAAATTTT
1 AAG-TTTGAGGTCAAAAAT-GAAATTTT
3854 GGAGGTTTAA
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
57 12 0.16
58 43 0.59
59 18 0.25
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.33
Consensus pattern (57 bp):
AAGTTTGAGGTCAAAAATGAAATTTTTGGACATCGAGGGAAAAATGGTAATTTTCGA
Found at i:4306 original size:23 final size:24
Alignment explanation
Indices: 4279--4349 Score: 62
Period size: 23 Copynumber: 3.1 Consensus size: 24
4269 TTCTCTTTTT
4279 TTATTTAATAT-TTAATAATATTA
1 TTATTTAATATATTAATAATATTA
* * *
4302 TTA-TTAATTTATTATTATTATTA
1 TTATTTAATATATTAATAATATTA
*
4325 TTA-TT-AT-TATTAAAAATAATTA
1 TTATTTAATATATTAATAAT-ATTA
4347 TTA
1 TTA
4350 AGATTATTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
21 7 0.17
22 15 0.38
23 18 0.45
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (24 bp):
TTATTTAATATATTAATAATATTA
Found at i:4311 original size:20 final size:20
Alignment explanation
Indices: 4288--4327 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
4278 TTTATTTAAT
4288 ATTTAATAATATTATTATTA
1 ATTTAATAATATTATTATTA
* *
4308 ATTTATTATTATTATTATTA
1 ATTTAATAATATTATTATTA
4328 TTATTATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
ATTTAATAATATTATTATTA
Found at i:4349 original size:3 final size:3
Alignment explanation
Indices: 4297--4336 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
4287 TATTTAATAA
*
4297 TAT TAT TAT TAA T-T TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
4337 AAAATAATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
2 1 0.03
3 33 0.97
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:5055 original size:17 final size:17
Alignment explanation
Indices: 5030--5102 Score: 65
Period size: 17 Copynumber: 4.1 Consensus size: 17
5020 GGACTTTTAA
* **
5030 TTAAGTTTTAAATCCAT
1 TTAAATTTTAAATAAAT
*
5047 TTAAATTTTAATTAAAT
1 TTAAATTTTAAATAAAT
*
5064 TTAAATTTAAAAGATAAAT
1 TTAAATTT-TAA-ATAAAT
*
5083 TTAAATTTAAAAATAAAT
1 TTAAATTT-TAAATAAAT
5101 TT
1 TT
5103 GAATCAATTT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
17 21 0.44
18 10 0.21
19 17 0.35
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.45
Consensus pattern (17 bp):
TTAAATTTTAAATAAAT
Found at i:5059 original size:6 final size:6
Alignment explanation
Indices: 5045--5093 Score: 55
Period size: 6 Copynumber: 8.2 Consensus size: 6
5035 TTTTAAATCC
* **
5045 ATTTAA ATTTTA A-TTAA ATTTAA ATTTAAA AGATAA ATTTAA ATTTAA
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTT-AA ATTTAA ATTTAA ATTTAA
5093 A
1 A
5094 AATAAATTTG
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
5 4 0.11
6 27 0.77
7 4 0.11
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (6 bp):
ATTTAA
Found at i:5083 original size:19 final size:18
Alignment explanation
Indices: 5045--5102 Score: 82
Period size: 19 Copynumber: 3.2 Consensus size: 18
5035 TTTTAAATCC
* *
5045 ATTTAAATTT-TAATTAA
1 ATTTAAATTTAAAAATAA
5062 ATTTAAATTTAAAAGATAA
1 ATTTAAATTTAAAA-ATAA
5081 ATTTAAATTTAAAAATAA
1 ATTTAAATTTAAAAATAA
5099 ATTT
1 ATTT
5103 GAATCAATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
17 10 0.27
18 10 0.27
19 17 0.46
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTTAAATTTAAAAATAA
Found at i:6716 original size:11 final size:11
Alignment explanation
Indices: 6702--6768 Score: 66
Period size: 11 Copynumber: 5.9 Consensus size: 11
6692 GTCCCTTTTT
*
6702 AATTTATTTTA
1 AATTTAATTTA
6713 AATTTAGATTT-
1 AATTTA-ATTTA
*
6724 ATTTTAAATTTA
1 AATTT-AATTTA
6736 AA-TTAATCTTA
1 AATTTAAT-TTA
6747 AATTTAAATTTA
1 AATTT-AATTTA
6759 AATTTAATTT
1 AATTTAATTT
6769 CAAAATTAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
10 3 0.06
11 26 0.55
12 15 0.32
13 3 0.06
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (11 bp):
AATTTAATTTA
Found at i:6725 original size:17 final size:17
Alignment explanation
Indices: 6702--6758 Score: 87
Period size: 17 Copynumber: 3.4 Consensus size: 17
6692 GTCCCTTTTT
6702 AATTTATTTTAAATTTA
1 AATTTATTTTAAATTTA
*
6719 GATTTATTTTAAATTTA
1 AATTTATTTTAAATTTA
* *
6736 AATTAATCTTAAATTTA
1 AATTTATTTTAAATTTA
6753 AATTTA
1 AATTTA
6759 AATTTAATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 35 1.00
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (17 bp):
AATTTATTTTAAATTTA
Found at i:6739 original size:23 final size:23
Alignment explanation
Indices: 6699--6765 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 23
6689 GGGGTCCCTT
* *
6699 TTTAATTT-ATTTTAAATTTAGA
1 TTTAATTTAAATTTAAATTTAAA
*
6721 TTTATTTTAAATTTAAA-TT-AA
1 TTTAATTTAAATTTAAATTTAAA
6742 TCTTAAATTTAAATTTAAATTTAA
1 T-TT-AATTTAAATTTAAATTTAA
6766 TTTCAAAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
21 2 0.06
22 11 0.31
23 20 0.56
24 2 0.06
25 1 0.03
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (23 bp):
TTTAATTTAAATTTAAATTTAAA
Found at i:6768 original size:17 final size:17
Alignment explanation
Indices: 6702--6765 Score: 76
Period size: 17 Copynumber: 3.7 Consensus size: 17
6692 GTCCCTTTTT
*
6702 AATTTATTTTAAATTTA
1 AATTTAATTTAAATTTA
* *
6719 GATTTATTTTAAATTTA
1 AATTTAATTTAAATTTA
6736 AA-TTAATCTTAAATTTA
1 AATTTAAT-TTAAATTTA
6753 AATTTAAATTTAA
1 AATTT-AATTTAA
6766 TTTCAAAATT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
16 4 0.10
17 28 0.68
18 6 0.15
19 3 0.07
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (17 bp):
AATTTAATTTAAATTTA
Found at i:6779 original size:6 final size:6
Alignment explanation
Indices: 6709--6778 Score: 67
Period size: 6 Copynumber: 12.0 Consensus size: 6
6699 TTTAATTTAT
* *
6709 TTTAAA TTTAGA TTT-AT TTTAAA TTTAAA -TT-AA TCTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA T-TTAAA TTTAAA
*
6755 TTTAAA TTT-AA TTTCAAA ATTAAA
1 TTTAAA TTTAAA TTT-AAA TTTAAA
6779 AAGTCCAAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
4 2 0.04
5 10 0.19
6 34 0.64
7 7 0.13
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (6 bp):
TTTAAA
Found at i:7568 original size:12 final size:12
Alignment explanation
Indices: 7551--7586 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
7541 CTGCCTCATT
7551 AATAATAATAAC
1 AATAATAATAAC
*
7563 AATAATATTAAC
1 AATAATAATAAC
7575 AATTAATAATAA
1 AA-TAATAATAA
7587 AAAAACTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 13 0.62
13 8 0.38
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.31
Consensus pattern (12 bp):
AATAATAATAAC
Found at i:8551 original size:17 final size:17
Alignment explanation
Indices: 8531--8618 Score: 88
Period size: 17 Copynumber: 5.0 Consensus size: 17
8521 TTCATTTTGG
*
8531 GTTTAAATTTAGTTTAA
1 GTTTAAATTTAATTTAA
**
8548 GTTTAAACTTTTCTTTTAA
1 GTTTAAA--TTTAATTTAA
*
8567 GTTTAAATTTAAATTAA
1 GTTTAAATTTAATTTAA
8584 GTTTAAATTTAATTTGAA
1 GTTTAAATTTAATTT-AA
*
8602 -TTTAAAATTTAAATTAA
1 GTTT-AAATTTAATTTAA
8619 TTAAAAAAAG
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
17 33 0.55
18 12 0.20
19 15 0.25
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.51
Consensus pattern (17 bp):
GTTTAAATTTAATTTAA
Found at i:8595 original size:12 final size:12
Alignment explanation
Indices: 8562--8616 Score: 60
Period size: 11 Copynumber: 4.7 Consensus size: 12
8552 AAACTTTTCT
*
8562 TTTAAGTTTAAA
1 TTTAAATTTAAA
*
8574 TTTAAA-TTAAG
1 TTTAAATTTAAA
8585 TTTAAATTT-AA
1 TTTAAATTTAAA
*
8596 TTTGAATTTAAAA
1 TTTAAATTT-AAA
8609 TTTAAATT
1 TTTAAATT
8617 AATTAAAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
11 19 0.54
12 7 0.20
13 9 0.26
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (12 bp):
TTTAAATTTAAA
Found at i:8606 original size:23 final size:23
Alignment explanation
Indices: 8562--8620 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
8552 AAACTTTTCT
* *
8562 TTTAAGTTTAAATTTAAATT-AAG
1 TTTAAATTT-AATTTAAATTAAAA
*
8585 TTTAAATTTAATTTGAATTTAAAA
1 TTTAAATTTAATTT-AAATTAAAA
8609 TTTAAA-TTAATT
1 TTTAAATTTAATT
8621 AAAAAAAGAG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
22 5 0.16
23 18 0.58
24 8 0.26
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (23 bp):
TTTAAATTTAATTTAAATTAAAA
Found at i:8620 original size:17 final size:17
Alignment explanation
Indices: 8571--8624 Score: 67
Period size: 17 Copynumber: 3.2 Consensus size: 17
8561 TTTTAAGTTT
8571 AAATTTAAATTAAGTTT-
1 AAATTTAAATTAA-TTTA
*
8588 AAATTTAATTTGAATTTA
1 AAATTTAAATT-AATTTA
8606 AAATTTAAATTAA-TTA
1 AAATTTAAATTAATTTA
8622 AAA
1 AAA
8625 AAAGAGTCCA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
16 6 0.18
17 15 0.45
18 12 0.36
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (17 bp):
AAATTTAAATTAATTTA
Found at i:8625 original size:17 final size:16
Alignment explanation
Indices: 8571--8624 Score: 63
Period size: 18 Copynumber: 3.2 Consensus size: 16
8561 TTTTAAGTTT
*
8571 AAATTTAAATTAAGTTT
1 AAATTTAAATTAA-TTA
*
8588 AAATTTAATTTGAATTTA
1 AAATTTAAATT-AA-TTA
8606 AAATTTAAATTAATTA
1 AAATTTAAATTAATTA
8622 AAA
1 AAA
8625 AAAGAGTCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
16 6 0.19
17 12 0.38
18 14 0.44
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (16 bp):
AAATTTAAATTAATTA
Found at i:10640 original size:59 final size:58
Alignment explanation
Indices: 10517--10929 Score: 561
Period size: 59 Copynumber: 7.1 Consensus size: 58
10507 CCTTGGAGGT
* * * *
10517 CCCCAAACTCCCAAAAATCCCA--TTTGACCCTGAAACTTCCAAAAATT-CCATTTTAC
1 CCCCGAACTTCCAAAAATCCCATTTTTGACCC-GAACCTTCTAAAAATTACCATTTTAC
10573 CCCCGAACTTCCAAAAATCCCATTTTTGACCTCGAACCTT-TCAAAAATTACCATTTTAC
1 CCCCGAACTTCCAAAAATCCCATTTTTGACC-CGAACCTTCT-AAAAATTACCATTTTAC
*
10632 CCCTGAACTTCCAAAAATCCCATTTTTGACCCTGAACCTTCTAAAAATTACCA-TTTAC
1 CCCCGAACTTCCAAAAATCCCATTTTTGACCC-GAACCTTCTAAAAATTACCATTTTAC
* *
10690 CCTCCGAACTTCCAAAAACCCCA-TTTTAACCCTGAACCTTCTAAAAATTACCATTTTAC
1 CC-CCGAACTTCCAAAAATCCCATTTTTGACCC-GAACCTTCTAAAAATTACCATTTTAC
*
10749 CCCCTAACTTCCAAAAATCCCATTTTTGACCTCGAACCTTCTAAAAATTACCATTTTAC
1 CCCCGAACTTCCAAAAATCCCATTTTTGACC-CGAACCTTCTAAAAATTACCATTTTAC
* *
10808 CCCCGAACTTACAAAAATCCCATTTTTGATCCCAAACCTTCTAAAAATTACCATTTTAC
1 CCCCGAACTTCCAAAAATCCCATTTTTGA-CCCGAACCTTCTAAAAATTACCATTTTAC
* * * * *
10867 CCTCGAACTTCCAAAAATCCCATTTTTGACTCCGAATCTTC-CAAAACTACCATTTTGC
1 CCCCGAACTTCCAAAAATCCCATTTTTGAC-CCGAACCTTCTAAAAATTACCATTTTAC
10925 CCCCG
1 CCCCG
10930 TGCATCCGAA
Statistics
Matches: 322, Mismatches: 22, Indels: 24
0.88 0.06 0.07
Matches are distributed among these distances:
56 20 0.06
58 94 0.29
59 204 0.63
60 4 0.01
ACGTcount: A:0.33, C:0.33, G:0.05, T:0.30
Consensus pattern (58 bp):
CCCCGAACTTCCAAAAATCCCATTTTTGACCCGAACCTTCTAAAAATTACCATTTTAC
Found at i:10736 original size:117 final size:118
Alignment explanation
Indices: 10522--10929 Score: 545
Period size: 117 Copynumber: 3.5 Consensus size: 118
10512 GAGGTCCCCA
* * *
10522 AACTCCCAAAAATCCCA--TTTGACCCTGAAACTTCCAAAAATT-CCATTTTACCCCCGAACTTC
1 AACTTCCAAAAATCCCATTTTTGACCCTGAACCTTCTAAAAATTACCATTTTACCCCCGAACTTC
*
10584 CAAAAATCCCATTTTTGA-CCTCGAACCTT-TCAAAAATTACCATTTTACCCCTG
66 CAAAAATCCCATTTTTAACCCT-GAACCTTCT-AAAAATTACCATTTTACCCCTG
10637 AACTTCCAAAAATCCCATTTTTGACCCTGAACCTTCTAAAAATTACCA-TTTACCCTCCGAACTT
1 AACTTCCAAAAATCCCATTTTTGACCCTGAACCTTCTAAAAATTACCATTTTACCC-CCGAACTT
*
10701 CCAAAAACCCCA-TTTTAACCCTGAACCTTCTAAAAATTACCATTTTACCCCCT-
65 CCAAAAATCCCATTTTTAACCCTGAACCTTCTAAAAATTACCATTTTA-CCCCTG
10754 AACTTCCAAAAATCCCATTTTTGA-CCTCGAACCTTCTAAAAATTACCATTTTACCCCCGAACTT
1 AACTTCCAAAAATCCCATTTTTGACCCT-GAACCTTCTAAAAATTACCATTTTACCCCCGAACTT
* * *
10818 ACAAAAATCCCATTTTTGATCCC-AAACCTTCTAAAAATTACCATTTTA-CCCTCG
65 CCAAAAATCCCATTTTT-AACCCTGAACCTTCTAAAAATTACCATTTTACCCCT-G
* * * *
10872 AACTTCCAAAAATCCCATTTTTGACTCC-GAATCTTC-CAAAACTACCATTTTGCCCCCG
1 AACTTCCAAAAATCCCATTTTTGAC-CCTGAACCTTCTAAAAATTACCATTTTACCCCCG
10930 TGCATCCGAA
Statistics
Matches: 265, Mismatches: 13, Indels: 28
0.87 0.04 0.09
Matches are distributed among these distances:
115 16 0.06
116 7 0.03
117 139 0.52
118 97 0.37
119 4 0.02
120 2 0.01
ACGTcount: A:0.33, C:0.33, G:0.05, T:0.30
Consensus pattern (118 bp):
AACTTCCAAAAATCCCATTTTTGACCCTGAACCTTCTAAAAATTACCATTTTACCCCCGAACTTC
CAAAAATCCCATTTTTAACCCTGAACCTTCTAAAAATTACCATTTTACCCCTG
Found at i:10762 original size:176 final size:175
Alignment explanation
Indices: 10522--10929 Score: 601
Period size: 176 Copynumber: 2.3 Consensus size: 175
10512 GAGGTCCCCA
* *
10522 AACTCCCAAAAATCCCA-TTTGACCCTGAAACTTCCAAAAATTCCATTTTACCCCCGAACTTCCA
1 AACTTCCAAAAATCCCATTTTAACCCTGAAACTTCCAAAAATTCCATTTTACCCCCGAACTTCCA
* *
10586 AAAATCCCATTTTTGACCTCGAACCTT-TCAAAAATTACCATTTTACCCCTGAACTTCCAAAAAT
66 AAAATCCCATTTTTGACCTCGAACCTTCT-AAAAATTACCATTTTACCCCCGAACTTACAAAAAT
*
10650 CCCATTTTTGA-CCCTGAACCTTCTAAAAATTACCA-TTTACCCTCCG
130 CCCATTTTTGATCCC-AAACCTTCTAAAAATTACCATTTTACCCT-CG
* * * *
10696 AACTTCCAAAAACCCCATTTTAACCCTGAACCTTCTAAAAATTACCATTTTACCCCCTAACTTCC
1 AACTTCCAAAAATCCCATTTTAACCCTGAAACTTCCAAAAATT-CCATTTTACCCCCGAACTTCC
10761 AAAAATCCCATTTTTGACCTCGAACCTTCTAAAAATTACCATTTTACCCCCGAACTTACAAAAAT
65 AAAAATCCCATTTTTGACCTCGAACCTTCTAAAAATTACCATTTTACCCCCGAACTTACAAAAAT
10826 CCCATTTTTGATCCCAAACCTTCTAAAAATTACCATTTTACCCTCG
130 CCCATTTTTGATCCCAAACCTTCTAAAAATTACCATTTTACCCTCG
* * * * *
10872 AACTTCCAAAAATCCCATTTTTGACTCC-GAATCTTCCAAAACTACCATTTTGCCCCCG
1 AACTTCCAAAAATCCCA-TTTTAAC-CCTGAAACTTCCAAAAATTCCATTTTACCCCCG
10930 TGCATCCGAA
Statistics
Matches: 210, Mismatches: 17, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
174 15 0.07
175 22 0.10
176 141 0.67
177 30 0.14
178 2 0.01
ACGTcount: A:0.33, C:0.33, G:0.05, T:0.30
Consensus pattern (175 bp):
AACTTCCAAAAATCCCATTTTAACCCTGAAACTTCCAAAAATTCCATTTTACCCCCGAACTTCCA
AAAATCCCATTTTTGACCTCGAACCTTCTAAAAATTACCATTTTACCCCCGAACTTACAAAAATC
CCATTTTTGATCCCAAACCTTCTAAAAATTACCATTTTACCCTCG
Found at i:10923 original size:29 final size:29
Alignment explanation
Indices: 10522--10923 Score: 296
Period size: 29 Copynumber: 13.8 Consensus size: 29
10512 GAGGTCCCCA
* *
10522 AACTCCCAAAAATCCCA-TTTGACCCT-G
1 AACTTCCAAAAATACCATTTTGACCCTCG
* *
10549 AAACTTCCAAAAATTCCATTTT-ACCCCCG
1 -AACTTCCAAAAATACCATTTTGACCCTCG
*
10578 AACTTCCAAAAATCCCATTTTTGA-CCTCG
1 AACTTCCAAAAATACCA-TTTTGACCCTCG
*
10607 AACCTTTCAAAAATTACCATTTT-ACCC-CTG
1 AA-CTTCCAAAAA-TACCATTTTGACCCTC-G
*
10637 AACTTCCAAAAATCCCATTTTTGACCCT-G
1 AACTTCCAAAAATACCA-TTTTGACCCTCG
*
10666 AACCTTCTAAAAATTACCA-TTT-ACCCTCCG
1 AA-CTTCCAAAAA-TACCATTTTGACCCT-CG
** *
10696 AACTTCCAAAAACCCCATTTTAACCCT-G
1 AACTTCCAAAAATACCATTTTGACCCTCG
* * *
10724 AACCTTCTAAAAATTACCATTTT-ACCCCCT
1 AA-CTTCCAAAAA-TACCATTTTGACCCTCG
*
10754 AACTTCCAAAAATCCCATTTTTGA-CCTCG
1 AACTTCCAAAAATACCA-TTTTGACCCTCG
* *
10783 AACCTTCTAAAAATTACCATTTT-ACCCCCG
1 AA-CTTCCAAAAA-TACCATTTTGACCCTCG
* * * *
10813 AACTTACAAAAATCCCATTTTTGATCC-CA
1 AACTTCCAAAAATACCA-TTTTGACCCTCG
*
10842 AACCTTCTAAAAATTACCATTTT-ACCCTCG
1 AA-CTTCCAAAAA-TACCATTTTGACCCTCG
* *
10872 AACTTCCAAAAATCCCATTTTTGACTC-CG
1 AACTTCCAAAAATACCA-TTTTGACCCTCG
*
10901 AATCTTCCAAAACTACCATTTTG
1 AA-CTTCCAAAAATACCATTTTG
10924 CCCCCGTGCA
Statistics
Matches: 300, Mismatches: 41, Indels: 65
0.74 0.10 0.16
Matches are distributed among these distances:
28 62 0.21
29 119 0.40
30 103 0.34
31 16 0.05
ACGTcount: A:0.33, C:0.32, G:0.04, T:0.30
Consensus pattern (29 bp):
AACTTCCAAAAATACCATTTTGACCCTCG
Found at i:12041 original size:29 final size:28
Alignment explanation
Indices: 11992--12347 Score: 214
Period size: 30 Copynumber: 11.8 Consensus size: 28
11982 GATCCCCGGG
*** *
11992 ACTTCCAAAAATTTTGTTTTTACCCTCGA
1 ACTTCCAAAAATTCCATTTTTACCC-CAA
*
12021 ACTTCCAAAAATTCCAATTTTGACCCCGAA
1 ACTTCCAAAAATTCC-ATTTTTACCCC-AA
*
12051 ACTTCCAAAAATTCAAAAAATTTCATTTTTACCCCCGA
1 ACTTCCAAAAATTC---------CATTTTTA-CCCCAA
* *
12089 ACTTCTAAAAATTTCATTTTTAACCCCAAA
1 ACTTCCAAAAATTCCATTTTT-ACCCC-AA
*
12119 ACTTCCAAAAATTCCATATTTACCCCCAA
1 ACTTCCAAAAATTCCATTTTTA-CCCCAA
*
12148 ACTTCCAAAAAATCCATTTTTTACCCTCAAA
1 ACTTCCAAAAATTCCA-TTTTTACCC-C-AA
* *
12179 ACTTCCAACAAA-TCAATTTTTAACCCTAAA
1 ACTTCCAA-AAATTCCATTTTT-ACCC-CAA
*
12209 ACTTCCAAAAATTTCATTTTTAACCCCAAA
1 ACTTCCAAAAATTCCATTTTT-ACCCC-AA
** * *
12239 ACTTTTAAAAATTTCATTTTTACCCCCGA
1 ACTTCCAAAAATTCCATTTTTA-CCCCAA
* *
12268 ACTTCCAAAAATGCCATTTTTGACTCCAAA
1 ACTTCCAAAAATTCCATTTTT-AC-CCCAA
* * *
12298 ACTT-CAAAAATTTTCATTTTTATCCTCGA
1 ACTTCCAAAAA-TTCCATTTTTA-CCCCAA
*
12327 ACCTCC-AAAATCTCCATTTTT
1 ACTTCCAAAAAT-TCCATTTTT
12348 CGACCTCGAA
Statistics
Matches: 262, Mismatches: 36, Indels: 58
0.74 0.10 0.16
Matches are distributed among these distances:
28 1 0.00
29 93 0.35
30 123 0.47
31 18 0.07
32 3 0.01
38 19 0.07
39 5 0.02
ACGTcount: A:0.36, C:0.27, G:0.03, T:0.34
Consensus pattern (28 bp):
ACTTCCAAAAATTCCATTTTTACCCCAA
Found at i:12087 original size:39 final size:38
Alignment explanation
Indices: 12027--12101 Score: 98
Period size: 38 Copynumber: 1.9 Consensus size: 38
12017 TCGAACTTCC
12027 AAAAATTCCAATTTTGACCCCGAAACTTCCAAAAATTCA
1 AAAAATTCCAATTTTGACCCCG-AACTTCCAAAAATTCA
* * *
12066 AAAAATTTC-ATTTTTACCCCCGAACTTCTAAAAATT
1 AAAAATTCCAATTTTGA-CCCCGAACTTCCAAAAATT
12102 TCATTTTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
38 19 0.59
39 13 0.41
ACGTcount: A:0.41, C:0.24, G:0.04, T:0.31
Consensus pattern (38 bp):
AAAAATTCCAATTTTGACCCCGAACTTCCAAAAATTCA
Found at i:12115 original size:68 final size:68
Alignment explanation
Indices: 11998--12309 Score: 203
Period size: 59 Copynumber: 5.0 Consensus size: 68
11988 CGGGACTTCC
** * * *
11998 AAAAATTTTGTTTTTACCCTCGAACTTCCAAAAATTCCAATTTTGACCCCGAAACTTCCAAAAAT
1 AAAAATTTCATTTTTACCCCCGAACTTCCAAAAATTCCAATTTTAACCCCAAAACTTCCAAAAAT
12063 TCA
66 TCA
* * *
12066 AAAAATTTCATTTTTACCCCCGAACTTCTAAAAATTTCATTTTTAACCCCAAAACTTCCAAAAAT
1 AAAAATTTCATTTTTACCCCCGAACTTCCAAAAATTCCAATTTTAACCCCAAAACTTCCAAAAAT
12131 TC-
66 TCA
* * * * *
12133 --------CATATTTACCCCCAAACTTCCAAAAAATCCATTTTTTACCCTCAAAACTTCCAACAA
1 AAAAATTTCATTTTTACCCCCGAACTTCCAAAAATTCCAATTTTAACCC-CAAAACTTCCAA-AA
12190 A-TC-
64 ATTCA
* *** * *
12193 ---AA--T--TTTTAACCCTAAAACTTCCAAAAATTTCATTTTTAACCCCAAAACTT-------T
1 AAAAATTTCATTTTTACCCCCGAACTTCCAAAAATTCCAATTTTAACCCCAAAACTTCCAAAAAT
12244 T--
66 TCA
* * * *
12245 AAAAATTTCATTTTTACCCCCGAACTTCCAAAAATGCCATTTTTGACTCCAAAACTT-CAAAAAT
1 AAAAATTTCATTTTTACCCCCGAACTTCCAAAAATTCCAATTTTAACCCCAAAACTTCCAAAAAT
12309 T
66 T
12310 TTCATTTTTA
Statistics
Matches: 196, Mismatches: 29, Indels: 41
0.74 0.11 0.15
Matches are distributed among these distances:
53 1 0.01
55 2 0.01
57 1 0.01
59 74 0.38
60 22 0.11
61 35 0.18
65 2 0.01
68 59 0.30
ACGTcount: A:0.38, C:0.26, G:0.03, T:0.33
Consensus pattern (68 bp):
AAAAATTTCATTTTTACCCCCGAACTTCCAAAAATTCCAATTTTAACCCCAAAACTTCCAAAAAT
TCA
Found at i:12118 original size:59 final size:59
Alignment explanation
Indices: 12055--12347 Score: 313
Period size: 59 Copynumber: 4.9 Consensus size: 59
12045 CCCGAAACTT
* * *
12055 CCAAAAATTCAAAAAATTTCATTTTTACCCCCGAACTTCTAAAAATTTCATTTTTAACC
1 CCAAAACTTCAAAAAATTTCATTTTTACCCCCGAACTTCCAAAAATTCCATTTTTAACC
* * * * * *
12114 CCAAAACTTCCAAAAATTCCATATTTACCCCCAAACTTCCAAAAAATCCATTTTTTACC
1 CCAAAACTTCAAAAAATTTCATTTTTACCCCCGAACTTCCAAAAATTCCATTTTTAACC
* *** *
12173 CTCAAAACTTCCAACAAA--TCAATTTTTAACCCTAAAACTTCCAAAAATTTCATTTTTAACC
1 C-CAAAACTT-CAAAAAATTTC-ATTTTT-ACCCCCGAACTTCCAAAAATTCCATTTTTAACC
** * * *
12234 CCAAAACTTTTAAAAATTTCATTTTTACCCCCGAACTTCCAAAAATGCCATTTTTGACT
1 CCAAAACTTCAAAAAATTTCATTTTTACCCCCGAACTTCCAAAAATTCCATTTTTAACC
* * * *
12293 CCAAAACTTCAAAAATTTTCATTTTTATCCTCGAACCTCC-AAAATCTCCATTTTT
1 CCAAAACTTCAAAAAATTTCATTTTTACCCCCGAACTTCCAAAAAT-TCCATTTTT
12348 CGACCTCGAA
Statistics
Matches: 192, Mismatches: 35, Indels: 14
0.80 0.15 0.06
Matches are distributed among these distances:
58 5 0.03
59 124 0.65
60 27 0.14
61 36 0.19
ACGTcount: A:0.37, C:0.27, G:0.02, T:0.34
Consensus pattern (59 bp):
CCAAAACTTCAAAAAATTTCATTTTTACCCCCGAACTTCCAAAAATTCCATTTTTAACC
Found at i:12316 original size:30 final size:29
Alignment explanation
Indices: 12055--12319 Score: 266
Period size: 30 Copynumber: 8.9 Consensus size: 29
12045 CCCGAAACTT
* *
12055 CCAAAAATTCAAAAAATTTCATTTTTACC
1 CCAAAACTTCCAAAAATTTCATTTTTACC
** *
12084 CCCGAACTTCTAAAAATTTCATTTTTAACC
1 CCAAAACTTCCAAAAATTTCATTTTT-ACC
* *
12114 CCAAAACTTCCAAAAATTCCATATTTACC
1 CCAAAACTTCCAAAAATTTCATTTTTACC
* * *
12143 CCCAAACTTCCAAAAAATCCATTTTTTACC
1 CCAAAACTTCCAAAAATTTCA-TTTTTACC
12173 CTCAAAACTTCCAACAAA--TCAATTTTTAACC
1 C-CAAAACTTCCAA-AAATTTC-ATTTTT-ACC
*
12204 CTAAAACTTCCAAAAATTTCATTTTTAACC
1 CCAAAACTTCCAAAAATTTCATTTTT-ACC
**
12234 CCAAAACTTTTAAAAATTTCATTTTTACC
1 CCAAAACTTCCAAAAATTTCATTTTTACC
** ** *
12263 CCCGAACTTCCAAAAATGCCATTTTTGACT
1 CCAAAACTTCCAAAAATTTCATTTTT-ACC
12293 CCAAAACTT-CAAAAATTTTCATTTTTA
1 CCAAAACTTCCAAAAA-TTTCATTTTTA
12320 TCCTCGAACC
Statistics
Matches: 197, Mismatches: 29, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
29 77 0.39
30 99 0.50
31 18 0.09
32 3 0.02
ACGTcount: A:0.38, C:0.26, G:0.02, T:0.34
Consensus pattern (29 bp):
CCAAAACTTCCAAAAATTTCATTTTTACC
Found at i:14561 original size:20 final size:20
Alignment explanation
Indices: 14536--14577 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
14526 TCTATTCTAA
*
14536 TCGCTTAATGCTATCTTTTT
1 TCGCTTAATGCTATATTTTT
14556 TCGCTTAATGCTATATTTTT
1 TCGCTTAATGCTATATTTTT
14576 TC
1 TC
14578 TACAAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.17, C:0.19, G:0.10, T:0.55
Consensus pattern (20 bp):
TCGCTTAATGCTATATTTTT
Found at i:17399 original size:33 final size:33
Alignment explanation
Indices: 17357--17430 Score: 148
Period size: 33 Copynumber: 2.2 Consensus size: 33
17347 CCTTCATTAC
17357 TGCGTCTGTCTGTGTGTTTGCATGTTACTATTG
1 TGCGTCTGTCTGTGTGTTTGCATGTTACTATTG
17390 TGCGTCTGTCTGTGTGTTTGCATGTTACTATTG
1 TGCGTCTGTCTGTGTGTTTGCATGTTACTATTG
17423 TGCGTCTG
1 TGCGTCTG
17431 ATTGTTTTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.08, C:0.16, G:0.28, T:0.47
Consensus pattern (33 bp):
TGCGTCTGTCTGTGTGTTTGCATGTTACTATTG
Done.