Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005404.1 Kokia drynarioides strain JFW-HI SEQ_119412, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1764
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.34


Found at i:177 original size:41 final size:40

Alignment explanation


    Indices: 129--229  Score: 100
    Period size: 38  Copynumber: 2.6  Consensus size: 40

        119 TCGACCTTGA

                                  ** *              
        129 GTCGATGAGACACTGGGTGTCATTATTTTACTTCGGATAG
          1 GTCGATGAGACACTGGGTGTCACCACTTTACTTCGGATAG

             *        **                         *   
        169 ATTCGATGAGGTACT-GG-GT-ACCACTTTACTTCGGCTAG
          1 -GTCGATGAGACACTGGGTGTCACCACTTTACTTCGGATAG

             *                     
        207 GCCGATGAGACACTGGGTGTCAC
          1 GTCGATGAGACACTGGGTGTCAC

        230 TTTATTGCTT


Statistics
Matches: 46,  Mismatches: 11, Indels: 7
        0.72            0.17        0.11

Matches are distributed among these distances:
  37   10  0.22
  38   17  0.37
  39    4  0.09
  40    4  0.09
  41   11  0.24

ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30


Consensus pattern (40 bp):   
GTCGATGAGACACTGGGTGTCACCACTTTACTTCGGATAG
Done.