Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005418.1 Kokia drynarioides strain JFW-HI SEQ_119439, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2506
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.32


Found at i:2456 original size:57 final size:57

Alignment explanation


    Indices: 2366--2480  Score: 212
    Period size: 57  Copynumber: 2.0  Consensus size: 57

       2356 GTATGTACAA

                                        *                            
       2366 CACGAAGGGTTGTGACTCTTCAAAATAGTATGCATTGAGTGCATATAAATAGAGGGT
          1 CACGAAGGGTTGTGACTCTTCAAAATAGCATGCATTGAGTGCATATAAATAGAGGGT

                                                  *                  
       2423 CACGAAGGGTTGTGACTCTTCAAAATAGCATGCATTGATTGCATATAAATAGAGGGT
          1 CACGAAGGGTTGTGACTCTTCAAAATAGCATGCATTGAGTGCATATAAATAGAGGGT

             
       2480 C
          1 C

       2481 TATTATGCTC


Statistics
Matches: 56,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  57   56  1.00

ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28


Consensus pattern (57 bp):   
CACGAAGGGTTGTGACTCTTCAAAATAGCATGCATTGAGTGCATATAAATAGAGGGT
Done.