Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005424.1 Kokia drynarioides strain JFW-HI SEQ_119450, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2592
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.33


Found at i:2200 original size:24 final size:24

Alignment explanation


    Indices: 2176--2229  Score: 72
    Period size: 24  Copynumber: 2.2  Consensus size: 24

       2166 TGGGCTTGGG

                                     
       2176 TTGTAATGGATAATTGGGTTAGGGT
          1 TTGTAATGGAT-ATTGGGTTAGGGT

                 *   *            * 
       2201 TTGTATTGGGTATTGGGTTAGGAT
          1 TTGTAATGGATATTGGGTTAGGGT

                 
       2225 TTGTA
          1 TTGTA

       2230 TTGGGTTTAG


Statistics
Matches: 26,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  24   17  0.65
  25    9  0.35

ACGTcount: A:0.20, C:0.00, G:0.35, T:0.44


Consensus pattern (24 bp):   
TTGTAATGGATATTGGGTTAGGGT

Found at i:2230 original size:24 final size:24

Alignment explanation


    Indices: 2188--2235  Score: 87
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       2178 GTAATGGATA

                       *            
       2188 ATTGGGTTAGGGTTTGTATTGGGT
          1 ATTGGGTTAGGATTTGTATTGGGT

                                    
       2212 ATTGGGTTAGGATTTGTATTGGGT
          1 ATTGGGTTAGGATTTGTATTGGGT

       2236 TTAGTTGATT


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.15, C:0.00, G:0.40, T:0.46


Consensus pattern (24 bp):   
ATTGGGTTAGGATTTGTATTGGGT
Done.