Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000543.1 Kokia drynarioides strain JFW-HI SEQ_111447, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3669
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.36


Found at i:2098 original size:18 final size:17

Alignment explanation


    Indices: 2075--2108  Score: 50
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       2065 ATATTTATGA

                              
       2075 TGTATTTGAGACATTATT
          1 TGTATTT-AGACATTATT

                      *     
       2093 TGTATTTAGATATTAT
          1 TGTATTTAGACATTAT

       2109 ATAAGGACTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    8  0.53
  18    7  0.47

ACGTcount: A:0.29, C:0.03, G:0.15, T:0.53


Consensus pattern (17 bp):   
TGTATTTAGACATTATT
Done.