Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005430.1 Kokia drynarioides strain JFW-HI SEQ_119459, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19589
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:1385 original size:16 final size:17

Alignment explanation


    Indices: 1358--1389  Score: 57
    Period size: 16  Copynumber: 1.9  Consensus size: 17

       1348 ATTAAATTAA

                             
       1358 ATAAATTATTAAAAATT
          1 ATAAATTATTAAAAATT

                            
       1375 ATAAA-TATTAAAAAT
          1 ATAAATTATTAAAAAT

       1390 CGATTCAACT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16   10  0.67
  17    5  0.33

ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38


Consensus pattern (17 bp):   
ATAAATTATTAAAAATT

Found at i:3480 original size:5 final size:5

Alignment explanation


    Indices: 3481--3507  Score: 54
    Period size: 5  Copynumber: 5.4  Consensus size: 5

       3471 TATATAATAT

                                            
       3481 ATAAA ATAAA ATAAA ATAAA ATAAA AT
          1 ATAAA ATAAA ATAAA ATAAA ATAAA AT

       3508 TATTTTTTTA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   22  1.00

ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22


Consensus pattern (5 bp):   
ATAAA

Found at i:5214 original size:2 final size:2

Alignment explanation


    Indices: 5207--5247  Score: 73
    Period size: 2  Copynumber: 20.5  Consensus size: 2

       5197 TTAAATATGA

                                                               *         
       5207 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       5248 GTAGTTTTAT


Statistics
Matches: 37,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   2   37  1.00

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (2 bp):   
AT

Found at i:10586 original size:2 final size:2

Alignment explanation


    Indices: 10581--10606  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

      10571 CTCTCTCTCT

                                                  
      10581 CA CA CA CA CA CA CA CA CA CA CA CA CA
          1 CA CA CA CA CA CA CA CA CA CA CA CA CA

      10607 TATACACATA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00


Consensus pattern (2 bp):   
CA

Done.