Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005432.1 Kokia drynarioides strain JFW-HI SEQ_119461, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2082
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32


Found at i:1076 original size:23 final size:23

Alignment explanation


    Indices: 1047--1100  Score: 99
    Period size: 23  Copynumber: 2.3  Consensus size: 23

       1037 ATGCTTCTTT

                                   
       1047 ATTGTCATGAATGCTTCCAGATA
          1 ATTGTCATGAATGCTTCCAGATA

                                   
       1070 ATTGTCATGAATGCTTCCAGATA
          1 ATTGTCATGAATGCTTCCAGATA

            *       
       1093 GTTGTCAT
          1 ATTGTCAT

       1101 CGAACACAAA


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  23   30  1.00

ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37


Consensus pattern (23 bp):   
ATTGTCATGAATGCTTCCAGATA
Done.