Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000544.1 Kokia drynarioides strain JFW-HI SEQ_111448, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2743
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30


Found at i:1046 original size:18 final size:19

Alignment explanation


    Indices: 1012--1047  Score: 56
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       1002 ATTTACTAAA

                               
       1012 TTGACCTTAATTAAAACCT
          1 TTGACCTTAATTAAAACCT

                    *         
       1031 TTGACCTTCA-TAAAACC
          1 TTGACCTTAATTAAAACC

       1048 AAAGCCCTTA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    7  0.44
  19    9  0.56

ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33


Consensus pattern (19 bp):   
TTGACCTTAATTAAAACCT

Found at i:1699 original size:37 final size:37

Alignment explanation


    Indices: 1653--1757  Score: 129
    Period size: 37  Copynumber: 2.8  Consensus size: 37

       1643 TCTGTATAGT

                *           *                **  
       1653 AATATCAAACAATTTCACATATCAATCAATTTAGTAC
          1 AATAACAAACAATTTCGCATATCAATCAATTTAACAC

               *       *                        *
       1690 AATGACAAACATTTTCGCATATCAATCAATTTAACAT
          1 AATAACAAACAATTTCGCATATCAATCAATTTAACAC

                           *   *           
       1727 AATAACAAACAATTTTGCACATCAATCAATT
          1 AATAACAAACAATTTCGCATATCAATCAATT

       1758 CAATACGGTA


Statistics
Matches: 57,  Mismatches: 11, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  37   57  1.00

ACGTcount: A:0.46, C:0.19, G:0.04, T:0.31


Consensus pattern (37 bp):   
AATAACAAACAATTTCGCATATCAATCAATTTAACAC
Done.