Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005442.1 Kokia drynarioides strain JFW-HI SEQ_119473, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1825
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.39


Found at i:944 original size:6 final size:6

Alignment explanation


    Indices: 935--966  Score: 55
    Period size: 6  Copynumber: 5.3  Consensus size: 6

        925 TTGAAAGACA

                                          *      
        935 AAGGGC AAGGGC AAGGGC AAGGGC AAAGGC AA
          1 AAGGGC AAGGGC AAGGGC AAGGGC AAGGGC AA

        967 AGTGTAAACA


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.41, C:0.16, G:0.44, T:0.00


Consensus pattern (6 bp):   
AAGGGC

Done.