Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01005447.1 Kokia drynarioides strain JFW-HI SEQ_119485, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4801
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.36
Found at i:1337 original size:105 final size:105
Alignment explanation
Indices: 1154--1471 Score: 627
Period size: 105 Copynumber: 3.0 Consensus size: 105
1144 CATTAAAACC
1154 TTAAAAATTTTAAAAAAATAGTTAGCCCTCAATGCCAAGCACCATCACAATTGTACTCTTCATAA
1 TTAAAAATTTT-AAAAAATAGTTAGCCCTCAATGCCAAGCACCATCACAATTGTACTCTTCATAA
1219 ATTTGAAATTTAATTCTTATATTTTTATTTTTTGAACTTAA
65 ATTTGAAATTTAATTCTTATATTTTTATTTTTTGAACTTAA
1260 TTAAAAATTTTAAAAAATAGTTAGCCCTCAATGCCAAGCACCATCACAATTGTACTCTTCATAAA
1 TTAAAAATTTTAAAAAATAGTTAGCCCTCAATGCCAAGCACCATCACAATTGTACTCTTCATAAA
1325 TTTGAAATTTAATTCTTATATTTTTATTTTTTGAACTTAA
66 TTTGAAATTTAATTCTTATATTTTTATTTTTTGAACTTAA
1365 TTAAAAATTTTAAAAAATAGTTAGCCCTCAATGCCAAGCACCATCACAATTGTACTCTTCATAAA
1 TTAAAAATTTTAAAAAATAGTTAGCCCTCAATGCCAAGCACCATCACAATTGTACTCTTCATAAA
1430 TTTGAAATTTAATTCTTATATTTTTATTTTTTGAACTTAA
66 TTTGAAATTTAATTCTTATATTTTTATTTTTTGAACTTAA
1470 TT
1 TT
1472 CTTCTACTTT
Statistics
Matches: 212, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
105 201 0.95
106 11 0.05
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.41
Consensus pattern (105 bp):
TTAAAAATTTTAAAAAATAGTTAGCCCTCAATGCCAAGCACCATCACAATTGTACTCTTCATAAA
TTTGAAATTTAATTCTTATATTTTTATTTTTTGAACTTAA
Done.