Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005451.1 Kokia drynarioides strain JFW-HI SEQ_119493, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15035
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35


Found at i:6170 original size:41 final size:41

Alignment explanation


    Indices: 6125--6202  Score: 129
    Period size: 41  Copynumber: 1.9  Consensus size: 41

       6115 GGAATGGTCT

                                  *                  
       6125 TGTCCCCTTTACGAGTTTCTTGGTTCTCTTTTCCTTTGTCC
          1 TGTCCCCTTTACGAGTTTCTTGCTTCTCTTTTCCTTTGTCC

                      **                         
       6166 TGTCCCCTTTGTGAGTTTCTTGCTTCTCTTTTCCTTT
          1 TGTCCCCTTTACGAGTTTCTTGCTTCTCTTTTCCTTT

       6203 TCTTGGCTCT


Statistics
Matches: 34,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  41   34  1.00

ACGTcount: A:0.04, C:0.28, G:0.14, T:0.54


Consensus pattern (41 bp):   
TGTCCCCTTTACGAGTTTCTTGCTTCTCTTTTCCTTTGTCC

Found at i:11731 original size:20 final size:20

Alignment explanation


    Indices: 11706--11754  Score: 98
    Period size: 20  Copynumber: 2.5  Consensus size: 20

      11696 TATTATATTT

                                
      11706 TATTTTGAAATATAAATCTA
          1 TATTTTGAAATATAAATCTA

                                
      11726 TATTTTGAAATATAAATCTA
          1 TATTTTGAAATATAAATCTA

                     
      11746 TATTTTGAA
          1 TATTTTGAA

      11755 TAAGCTTAAT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   29  1.00

ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47


Consensus pattern (20 bp):   
TATTTTGAAATATAAATCTA
Done.