Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005458.1 Kokia drynarioides strain JFW-HI SEQ_119501, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3074
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.36


Found at i:719 original size:17 final size:17

Alignment explanation


    Indices: 697--729  Score: 50
    Period size: 17  Copynumber: 1.9  Consensus size: 17

        687 TAGTAAAAAT

                              
        697 ATAATTT-TATCATTTAA
          1 ATAATTTATATC-TTTAA

                            
        714 ATAATTTATATCTTTA
          1 ATAATTTATATCTTTA

        730 CCATTTTTAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  17   11  0.73
  18    4  0.27

ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55


Consensus pattern (17 bp):   
ATAATTTATATCTTTAA

Found at i:2322 original size:22 final size:22

Alignment explanation


    Indices: 2277--2324  Score: 62
    Period size: 22  Copynumber: 2.2  Consensus size: 22

       2267 TAAAAGAAAA

                              **  
       2277 AAAATGTCCAAATACAAATTCT
          1 AAAATGTCCAAATACAAACACT

                                   
       2299 AAAA-GTCCAAATTACAAACACT
          1 AAAATGTCCAAA-TACAAACACT

                
       2321 AAAA
          1 AAAA

       2325 CCCATACCTC


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  21    7  0.30
  22   16  0.70

ACGTcount: A:0.56, C:0.19, G:0.04, T:0.21


Consensus pattern (22 bp):   
AAAATGTCCAAATACAAACACT
Done.