Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005459.1 Kokia drynarioides strain JFW-HI SEQ_119503, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 716

Length: 1194
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34


Found at i:1069 original size:15 final size:16

Alignment explanation


    Indices: 1045--1085  Score: 55
    Period size: 16  Copynumber: 2.6  Consensus size: 16

       1035 AAAAAATTAA

                     *      
       1045 TTTTCTTTTTACAACT
          1 TTTTCTTTTAACAACT

                         ** 
       1061 TTTTCTTTTAACATTT
          1 TTTTCTTTTAACAACT

                     
       1077 TTTTCTTTT
          1 TTTTCTTTT

       1086 CTTTTTAAAT


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  16   22  1.00

ACGTcount: A:0.15, C:0.15, G:0.00, T:0.71


Consensus pattern (16 bp):   
TTTTCTTTTAACAACT
Done.