genome.fa.s5461.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01005461.1 Kokia drynarioides strain JFW-HI SEQ_119506, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  187920

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120--369	59	4.3	58	75	9	188	37	7	24	31	1.82
332--779	29	15.3	29	75	5	301	33	3	24	38	1.71
288--792	117	4.3	116	82	6	529	33	3	25	37	1.73
296--791	59	8.5	59	84	5	555	33	3	25	37	1.72
7186--7305	53	2.3	52	92	1	195	38	15	4	41	1.67
8031--8055	11	2.3	11	100	0	50	20	36	16	28	1.93
11971--12031	30	2.0	30	84	9	79	34	8	1	55	1.39
12060--12105	21	2.2	21	88	7	67	39	2	0	58	1.10
14030--14064	19	1.9	18	88	11	54	37	17	5	40	1.73
16752--16828	30	2.6	30	85	2	102	12	32	29	24	1.93
16771--16824	17	3.4	17	70	19	53	11	31	31	25	1.91
20286--20362	23	3.4	23	89	1	120	48	11	20	19	1.80
21532--21602	30	2.5	30	93	6	121	25	35	15	23	1.94
39850--39889	21	1.9	22	85	10	57	30	17	27	25	1.97
40271--40613	43	8.0	43	84	4	376	30	28	16	24	1.96
45062--45116	22	2.4	23	87	6	85	12	23	25	38	1.90
51242--51285	17	2.6	17	92	0	70	47	2	31	18	1.61
51440--51522	41	2.0	41	80	0	94	24	18	15	42	1.89
53473--53768	41	7.2	41	82	3	328	24	29	17	28	1.98
53473--53768	82	3.6	82	83	3	364	24	29	17	28	1.98
53473--53768	123	2.4	123	83	2	362	24	29	17	28	1.98
55809--55992	42	4.4	42	82	8	180	39	11	25	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55834--55984	42	3.6	42	87	2	187	41	9	24	25	1.84
64978--65026	17	3.2	17	72	27	63	46	0	0	53	1.00
64962--65063	29	3.4	29	90	2	159	50	0	1	48	1.12
65119--65543	193	2.2	193	89	3	651	34	23	8	33	1.85
66101--66214	20	5.9	20	72	19	98	49	0	0	50	1.06
66101--66209	47	2.3	49	87	7	161	50	0	0	49	1.00
66133--66207	29	2.5	30	82	4	89	52	0	0	48	1.00
67155--67272	42	2.8	42	92	1	184	41	11	22	24	1.86
67119--67308	42	4.5	42	82	4	177	38	12	24	25	1.90
89010--89095	33	2.6	32	76	20	88	24	6	12	55	1.61
89060--89138	31	2.6	30	76	4	79	26	10	7	55	1.60
95099--95130	13	2.5	13	89	0	55	78	3	0	18	0.89
95440--95479	20	2.0	21	85	5	55	42	22	22	12	1.87
103736--103795	24	2.4	24	78	15	68	43	10	13	33	1.77
103880--103913	12	2.8	12	90	0	59	50	17	17	14	1.79
112589--112673	42	2.0	42	95	0	152	22	16	21	40	1.91
113829--113879	3	17.3	3	78	11	52	72	25	0	1	0.95
113833--113878	12	3.9	12	82	5	67	71	26	0	2	0.97
113829--113918	24	3.8	23	83	2	99	70	21	4	4	1.23
113812--113877	20	3.1	20	74	16	60	71	22	0	6	1.08
115214--115261	16	3.0	15	76	11	51	39	0	2	58	1.10
125810--125845	18	2.0	18	100	0	72	27	16	5	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136559--136647	30	2.8	32	83	11	103	57	0	2	40	1.11
136578--136633	29	2.0	27	82	10	67	58	0	0	41	0.98
139307--139353	16	2.9	16	72	15	51	29	0	2	68	1.02
142800--142979	9	18.8	9	71	17	105	34	0	5	60	1.20
142800--142871	28	2.6	27	79	14	83	34	0	6	58	1.25
142800--142979	20	9.4	18	73	14	105	34	0	5	60	1.20
142828--142975	28	5.1	28	68	18	90	33	0	5	60	1.19
149806--149859	12	4.4	12	84	9	65	20	1	3	74	1.07
149803--149859	25	2.3	25	82	11	73	22	1	3	71	1.10
150592--150616	10	2.5	10	100	0	50	92	0	8	0	0.40
160851--161101	124	2.0	125	92	2	416	49	16	7	26	1.72
171215--171256	12	3.4	12	84	15	59	30	16	21	30	1.95
171509--171543	7	5.0	7	100	0	70	14	71	0	14	1.15
174329--174384	22	2.5	22	91	0	85	39	14	19	26	1.90
175091--175171	34	2.4	34	91	0	126	50	18	16	14	1.78
176314--176359	11	4.2	11	97	0	83	45	2	10	41	1.51
176305--176359	22	2.5	22	90	3	83	43	3	9	43	1.53
177596--177689	28	3.3	28	88	4	136	40	24	17	18	1.91
181056--181117	30	2.1	30	88	11	92	43	12	4	38	1.64
184076--184131	22	2.7	20	78	15	60	55	1	1	41	1.21
185614--185663	17	3.3	15	76	17	50	26	2	0	72	0.96
185614--185666	15	3.4	15	80	14	63	26	1	0	71	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186612--186636	2	12.5	2	100	0	50	52	0	0	48	1.00
187052--187467	207	2.0	207	97	0	787	42	15	6	36	1.71

Tables:   1

The End!