Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005463.1 Kokia drynarioides strain JFW-HI SEQ_119509, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5742
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32


Found at i:1003 original size:16 final size:17

Alignment explanation


    Indices: 972--1005  Score: 52
    Period size: 16  Copynumber: 2.1  Consensus size: 17

        962 TCCAACATTT

                     *       
        972 TTATTTTATGTTTTTTA
          1 TTATTTTATATTTTTTA

                             
        989 TTATTTT-TATTTTTTA
          1 TTATTTTATATTTTTTA

             
       1005 T
          1 T

       1006 CCTTGATTTA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16    9  0.56
  17    7  0.44

ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79


Consensus pattern (17 bp):   
TTATTTTATATTTTTTA
Done.