Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005469.1 Kokia drynarioides strain JFW-HI SEQ_119516, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 984

Length: 1641
ACGTcount: A:0.41, C:0.16, G:0.13, T:0.29


Found at i:697 original size:14 final size:13

Alignment explanation


    Indices: 656--703  Score: 53
    Period size: 13  Copynumber: 3.6  Consensus size: 13

        646 ATACAATTTT

                        *
        656 TTTTTCTTTTC-T
          1 TTTTTCTTTTCAA

                  *       
        668 TTTCTTTTTTTCAA
          1 TTT-TTCTTTTCAA

                          
        682 TTTTTCTTTTCGAA
          1 TTTTTCTTTTC-AA

                    
        696 TTTTTCTT
          1 TTTTTCTT

        704 CTTCTTCTTT


Statistics
Matches: 30,  Mismatches: 3, Indels: 4
        0.81            0.08        0.11

Matches are distributed among these distances:
  12    3  0.10
  13   14  0.47
  14   13  0.43

ACGTcount: A:0.08, C:0.15, G:0.02, T:0.75


Consensus pattern (13 bp):   
TTTTTCTTTTCAA
Done.