Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005472.1 Kokia drynarioides strain JFW-HI SEQ_119519, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7948
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.34


Found at i:1916 original size:51 final size:51

Alignment explanation


    Indices: 1831--1933  Score: 152
    Period size: 51  Copynumber: 2.0  Consensus size: 51

       1821 CAGTGCCCAG

                             *  *                              
       1831 ATTTACTCATTCGCAGATCATTGGTGGTTATGGTGCTGATCGCAACGTGGT
          1 ATTTACTCATTCGCAGACCACTGGTGGTTATGGTGCTGATCGCAACGTGGT

                *   *                                **        
       1882 ATTTGCTCCTTCGCAGACCACTGGTGGTTATGGTGCTGATCTTAACGTGGT
          1 ATTTACTCATTCGCAGACCACTGGTGGTTATGGTGCTGATCGCAACGTGGT

             
       1933 A
          1 A

       1934 CCTGTAGTGT


Statistics
Matches: 46,  Mismatches: 6, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  51   46  1.00

ACGTcount: A:0.18, C:0.19, G:0.27, T:0.35


Consensus pattern (51 bp):   
ATTTACTCATTCGCAGACCACTGGTGGTTATGGTGCTGATCGCAACGTGGT
Done.