Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005475.1 Kokia drynarioides strain JFW-HI SEQ_119524, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3147
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31


Found at i:571 original size:14 final size:14

Alignment explanation


    Indices: 540--578  Score: 51
    Period size: 14  Copynumber: 2.8  Consensus size: 14

        530 CAGTTTGCTT

                   *     *
        540 GAAAATGGTTTCCG
          1 GAAAATGATTTCCA

                        * 
        554 GAAAATGATTTCTA
          1 GAAAATGATTTCCA

                       
        568 GAAAATGATTT
          1 GAAAATGATTT

        579 ATTTTTCTGG


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  14   22  1.00

ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33


Consensus pattern (14 bp):   
GAAAATGATTTCCA
Done.