Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005476.1 Kokia drynarioides strain JFW-HI SEQ_119527, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 843

Length: 1406
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33


Found at i:702 original size:12 final size:12

Alignment explanation


    Indices: 671--703  Score: 50
    Period size: 12  Copynumber: 2.8  Consensus size: 12

        661 AAAACTCATT

                        
        671 TTATTTTATTTA
          1 TTATTTTATTTA

                         
        683 TT-TATTTATTTA
          1 TTAT-TTTATTTA

                     
        695 TTATTTTAT
          1 TTATTTTAT

        704 AAATATAAAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 4
        0.83            0.00        0.17

Matches are distributed among these distances:
  11    1  0.05
  12   17  0.89
  13    1  0.05

ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76


Consensus pattern (12 bp):   
TTATTTTATTTA
Done.