Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005484.1 Kokia drynarioides strain JFW-HI SEQ_119541, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1984
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.34


Found at i:1456 original size:61 final size:61

Alignment explanation


    Indices: 1361--1517  Score: 255
    Period size: 61  Copynumber: 2.6  Consensus size: 61

       1351 ACCCTTAGAG

                   *                    *  *                               
       1361 TTCTACCGATACAAGT-TGGGA-TCTACCAGTACAACAACTCCAACTGTCACTTTGCAAAGGC
          1 TTCTACCAATACAAGTCT--GATTCTACTAGAACAACAACTCCAACTGTCACTTTGCAAAGGC

                                                                         
       1422 TTCTACCAATACAAGTCTGATTCTACTAGAACAACAACTCCAACTGTCACTTTGCAAAGGC
          1 TTCTACCAATACAAGTCTGATTCTACTAGAACAACAACTCCAACTGTCACTTTGCAAAGGC

                                               
       1483 TTCTACCAATACAAGTCTGATTCTACTAGAACAAC
          1 TTCTACCAATACAAGTCTGATTCTACTAGAACAAC

       1518 GAAGCCAGAA


Statistics
Matches: 91,  Mismatches: 3, Indels: 4
        0.93            0.03        0.04

Matches are distributed among these distances:
  60    2  0.02
  61   88  0.97
  62    1  0.01

ACGTcount: A:0.34, C:0.27, G:0.13, T:0.26


Consensus pattern (61 bp):   
TTCTACCAATACAAGTCTGATTCTACTAGAACAACAACTCCAACTGTCACTTTGCAAAGGC
Done.