Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005491.1 Kokia drynarioides strain JFW-HI SEQ_119552, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5551
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:5524 original size:205 final size:201

Alignment explanation


    Indices: 5155--5551  Score: 607
    Period size: 205  Copynumber: 2.0  Consensus size: 201

       5145 GCGATTATCC

                  *                                               *    *     
       5155 ACAAACGACGCGGTCATCTTCCTGATGAGATACTGAGAAAAAGACCAAATCAAATCCACGCTCGA
          1 ACAAACAACGCGGTCATCTTCCTGATGAGATACTGAGAAAAAGACCAAATCAAACCCACCCTCGA

                                           *           *        *            
       5220 ACAAATCTTCGAACCCCAACTTCCTGATGAGGCACTAAGAAGCTGGTCGAAGTAATAAAACGGTT
         66 ACAAATCTTCGAACCCCAACTTCCTGATGAGACACTAAGAAGCAGGTCGAAGCAATAAAACGGTT

                                       *                          *          
       5285 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATATAGAGAAGCAA
        131 AGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCAA

                  
       5350 ATTGAA
        196 ATTGAA

                      *                            *                         
       5356 ACAAACAACGTGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACCCACCCTCGA
          1 ACAAACAACGCGGTCATCTTCCTGATGAGATACTGAGAAAAAGACCAAATCAAACCCACCCTC--

                                   *                 *          *        *   
       5421 TGTGAACAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAGAAGCAGGTTGAAGCAA-CAAA
         64 ---GAACAAATCTTCGAACCCCAACTTCCTGATGAGACACTAAGAAGCAGGTCGAAGCAATAAAA

                                                               *             
       5485 CGGTTAGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCCTGTTGAGATACAGAGA
        126 CGGTTAGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATACAGAGA

              
       5550 AG
        191 AG


Statistics
Matches: 176,  Mismatches: 15, Indels: 6
        0.89            0.08        0.03

Matches are distributed among these distances:
 201   58  0.33
 205   67  0.38
 206   51  0.29

ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21


Consensus pattern (201 bp):   
ACAAACAACGCGGTCATCTTCCTGATGAGATACTGAGAAAAAGACCAAATCAAACCCACCCTCGA
ACAAATCTTCGAACCCCAACTTCCTGATGAGACACTAAGAAGCAGGTCGAAGCAATAAAACGGTT
AGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCAA
ATTGAA
Done.