Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005494.1 Kokia drynarioides strain JFW-HI SEQ_119556, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 796

Length: 1327
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33


Found at i:143 original size:21 final size:21

Alignment explanation


    Indices: 119--162  Score: 54
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        109 TAAAAATCTA

                                  
        119 AAATACCAAAAATAA-AAAAAT
          1 AAATA-CAAAAATAATAAAAAT

                 *          *    
        140 AAATAGAAAAATAATATAAAT
          1 AAATACAAAAATAATAAAAAT

              
        161 AA
          1 AA

        163 CCAAAATAAA


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  20    8  0.40
  21   12  0.60

ACGTcount: A:0.75, C:0.05, G:0.02, T:0.18


Consensus pattern (21 bp):   
AAATACAAAAATAATAAAAAT

Found at i:179 original size:38 final size:34

Alignment explanation


    Indices: 91--179  Score: 90
    Period size: 38  Copynumber: 2.5  Consensus size: 34

         81 AAATAAAAAT

                                     *         
         91 AAAAATAATATTAATAAATAAAAATCTAAAATACC
          1 AAAAATAA-ATTAATAAATAAAAATATAAAATACC

                     **                            
        126 AAAAATAAAAAAATAAATAGAAAAATAATATAAATAACC
          1 AAAAATAAATTAATAAAT--AAAAAT-ATA-AAAT-ACC

                            
        165 -AAAATAAATTAATAA
          1 AAAAATAAATTAATAA

        180 TGAAGTATAA


Statistics
Matches: 44,  Mismatches: 5, Indels: 7
        0.79            0.09        0.12

Matches are distributed among these distances:
  34    8  0.18
  35    8  0.18
  36    6  0.14
  37    2  0.05
  38   17  0.39
  39    3  0.07

ACGTcount: A:0.71, C:0.06, G:0.01, T:0.22


Consensus pattern (34 bp):   
AAAAATAAATTAATAAATAAAAATATAAAATACC
Done.