Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01005507.1 Kokia drynarioides strain JFW-HI SEQ_119577, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1834
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.27
Found at i:608 original size:216 final size:216
Alignment explanation
Indices: 1--1827 Score: 1944
Period size: 216 Copynumber: 8.5 Consensus size: 216
* * *
1 TACTTTAAGGAACCGAAGTTATAAAAGTACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGACCAA
1 TACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTGAAAAGTTCGGAAGTTCGGCCAA
* * *
66 GAACC-A-AGAGAAACAATTCCCACAAAAATAAATTTTTAATCAAAAGACCAAAAGTTGTTTACA
66 GAACCAAGAGAGAAACAATTCTCACAGAAATAAATTTTTAATCCAAAGACCAAAAGTTGTTTACA
* * * * * * *
129 AAATGACAAATTATTTAGACCAAATGATGCAATTTCCCAAGAACGAAATGTTCGAAAAATTGTTC
131 AAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCAAAAAATTGTTC
* *
194 GAAGAAATGGATCATCTTGAA
196 GAAGAAATCGATCGTCTTGAA
* * *
215 TACTTTAAGGTCAA--AAAGTTATAAAAGAACTCGAAAAAGTGT-ACAAAG-T---AAGTTCTGC
1 TACTTTAAGG--AACCGAAGTTATAAAAGAACTCGAAAAAGTTTGA-AAAGTTCGGAAGTTCGGC
* * * * * * * * * * *
273 CTAGAACCACGAGTGAAATAATTCTTA-TGTAAATAAGTTTTTAATTCAAAGATCGAAAGTTTTT
63 CAAGAACCAAGAGAGAAACAATTCTCACAG-AAATAAATTTTTAATCCAAAGACCAAAAGTTGTT
* * ** * *
337 TGCAAAAGGACTA-ATTATTTGGACCAAATGATATGATTTCCCGAAAATAGAATGTTCAAAAAAT
127 TACAAAATGAC-AGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCAAAAAAT
**
401 TAATCGAAGAAATCGATCGTCTTGAA
191 TGTTCGAAGAAATCGATCGTCTTGAA
* * * * *
427 TACTTTAAGGAACCGAAGATATAAAAGTACTCGATAAAGTTTGAAAAGTTCAGAAGTTCAGCCAA
1 TACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTGAAAAGTTCGGAAGTTCGGCCAA
* *
492 GAACCAAGAAAGAAACAATTCTCACAGAAATAAAATTTTAATCC-AAGAACCAAAAGTTGTTTAC
66 GAACCAAGAGAGAAACAATTCTCACAGAAATAAATTTTTAATCCAAAG-ACCAAAAGTTGTTTAC
* * * ** *
556 AAAATGATAGATTATTTGGACCAAATGATGTGATTTCTCGAGAATGGAATGTTTGAAAAATTCTT
130 AAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCAAAAAATTGTT
* * *
621 CGACGAAATGGATCGTCTGGAA
195 CGAAGAAATCGATCGTCTTGAA
* * * * *
643 TACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGCAAAGTTTGGAAGTTTGGCCTA
1 TACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTGAAAAGTTCGGAAGTTCGGCCAA
* * * * * * *
708 GAACCAAGAGTGAGATAATTATCAC-GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTTTTTAC
66 GAACCAAGAGAGAAACAATTCTCACAG-AAATAAATTTTTAATCCAAAGACCAAAAGTTGTTTAC
* * * * * ** *
772 AAAAGGATTA-ATTATTTGGACCAAATGATGTGATTTCTCGAAAATGGAATGTTTGAAAAATTGC
130 AAAATGA-CAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCAAAAAATTGT
* * *
836 TCGAAGGAATTGATCATCTTGAA
194 TCGAAGAAATCGATCGTCTTGAA
* *
859 TACTTTAAGGAACCGAAGTTATAAAAGTACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAA
1 TACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTGAAAAGTTCGGAAGTTCGGCCAA
* * *
924 GAACC-A-AGAGAAACAATTCCCACATAAATAAATTTTTAATCAAAAGACCAAAAGTTGTTTACA
66 GAACCAAGAGAGAAACAATTCTCACAGAAATAAATTTTTAATCCAAAGACCAAAAGTTGTTTACA
* * * ** * *
987 AAATGACAGATTATTTAGACCAAATGATGCAATTT-CCAAGAATAAAATGTTCGAAATATTGTTC
131 AAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCAAAAAATTGTTC
* *
1051 GAAGAAATGGATCATCTTGAA
196 GAAGAAATCGATCGTCTTGAA
*** * *
1072 TACTTTAAGGAAAAAAAGTTATAAAAGAACTCGAAAAAGTTT-ACAAAG-T---AAGTTCTGCCT
1 TACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTGA-AAAGTTCGGAAGTTCGGCCA
* * * * * * * * * *
1132 AGAACCATGAGTGAAATAATTCTTAC-GTAAATAAGTTTTTAATTCAAAGATCGAAAGTTTTTTG
65 AGAACCAAGAGAGAAACAATTCTCACAG-AAATAAATTTTTAATCCAAAGACCAAAAGTTGTTTA
* *
1196 CAAAAGGACTA-ATTATTTGGACCAAATGATGCGATTTCCCGAGAATAGAATGTTCAAAAAATTG
129 CAAAATGAC-AGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCAAAAAATTG
* * *
1260 ATCGAAGGAATCAATCGTCTTGAA
193 TTCGAAGAAATCGATCGTCTTGAA
* * * * * **
1284 TATTTTAAGGAATCGAAGATATAAAAGTACTCGACAAAGTTTGAAAAGTTCGGAAGTTCAACCAA
1 TACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTGAAAAGTTCGGAAGTTCGGCCAA
* *
1349 GAACCAAGAAAGAAACAATTCTCACAGAAATTAAA-TTTTAATCCAAAGAGCAAAAGTTGTTTAC
66 GAACCAAGAGAGAAACAATTCTCACAGAAA-TAAATTTTTAATCCAAAGACCAAAAGTTGTTTAC
* * * *
1413 AAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCAAGAATGGAATGCTCAGAAAATTGCT
130 AAAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCAAAAAATTGTT
* * *
1478 CGAAGGAATCGATTGTCATGAA
195 CGAAGAAATCGATCGTCTTGAA
* * * ** * *
1500 TACTCTAAGGAACCGAAGCTATAAAAGAACTTGAAAAAGTTTGACTAGTTTGGAAGTTCTGCCAA
1 TACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTGAAAAGTTCGGAAGTTCGGCCAA
* * * * *
1565 GAACAAAGAGAGAAACATTTCTCACATAAATAATTTTTTAATCCAAAGACAAAAAGTTGTTTACA
66 GAACCAAGAGAGAAACAATTCTCACAGAAATAAATTTTTAATCCAAAGACCAAAAGTTGTTTACA
* * * * *
1630 AAATGACAGCTTATTTGGACCTAATGATGCAATTTCTCGAGAACGGAATGTTCAAAAAATTGTTC
131 AAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCAAAAAATTGTTC
*
1695 GAA-AAATTAGATCGTCTTGAA
196 GAAGAAA-TCGATCGTCTTGAA
* * * * * * *
1716 TACTTTAAGGAACCAAAGTTATAAAAGAGCTCGAAACAGTTTGCAAAGTTTGGAAGTTTGGCCTA
1 TACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTGAAAAGTTCGGAAGTTCGGCCAA
* * * *
1781 GAACCAAGAGAGAAATAATTCTTAC-GTAAATAAGTTTTTAATTCAAA
66 GAACCAAGAGAGAAACAATTCTCACAG-AAATAAATTTTTAATCCAAA
1828 AACCGAA
Statistics
Matches: 1332, Mismatches: 242, Indels: 76
0.81 0.15 0.05
Matches are distributed among these distances:
209 15 0.01
210 16 0.01
211 74 0.06
212 232 0.17
213 89 0.07
214 112 0.08
215 12 0.01
216 772 0.58
217 10 0.01
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (216 bp):
TACTTTAAGGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTGAAAAGTTCGGAAGTTCGGCCAA
GAACCAAGAGAGAAACAATTCTCACAGAAATAAATTTTTAATCCAAAGACCAAAAGTTGTTTACA
AAATGACAGATTATTTGGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCAAAAAATTGTTC
GAAGAAATCGATCGTCTTGAA
Found at i:874 original size:432 final size:427
Alignment explanation
Indices: 1--1828 Score: 2291
Period size: 432 Copynumber: 4.3 Consensus size: 427
*
1 TACTTTAAGGAACCGAAGTTATAAAAGTACTCGAAAAAGTTTGACAAGTTCGGAAGTTC-GACCA
1 TACTTTAAGGAACCGAAGTTATAAAAGTACTCGAAAAAGTTTGAAAAGTTCGGAAGTTCAG-CCA
* * *
65 AGAACCAAG-AGAAACAATTCCCACAAAAATAAATTTTTAATCAAAAGACCAAAAGTTGTTTACA
65 AGAACCAAGAAGAAACAATTCTCACAGAAATAAAATTTTAATCAAAAGACCAAAAGTTGTTTACA
* * *
129 AAATGACAAATTATTTAGACCAAATGATGCAATTTCCCAAGAACGAAATGTTCGAAAAATTGTTC
130 AAATGACAGATTATTTAGACCAAATGATGCAATTTCCCAAGAATGAAATGTTCGAAAAATTCTTC
*
194 GAAGAAATGGATCATCTTGAATACTTTAAGGTCAA--AAAGTTATAAAAGAACTCGAAAAAGTGT
195 GAAGAAATGGATCATCTTGAATACTTTAAGG--AACCAAAGTTATAAAAGAACTCGAAAAAGTTT
* * *
257 ACAAAGTAAGTTCTGCCTAGAACCACGAGTGAAATAATTCTTATGTAAATAAGTTTTTAATTCAA
258 ACAAAGTAAGTTCTGCCTAGAACCAAGAGTGAAATAATTCTCACGTAAATAAGTTTTTAATTCAA
* * * **
322 AGATCGAAAGTTTTTTGCAAAAGGACTAATTATTTGGACCAAATGATATGATTTCCCGAAAATAG
323 AGACCAAAAGTTTTTTACAAAAGGACTAATTATTTGGACCAAATGATGCGATTTCCCGAAAATAG
*
387 AATGTTCAAAAAATTAATCGAAGAAATCGATCGTCTTGAA
388 AATGTTCAAAAAATTGATCGAAGAAATCGATCGTCTTGAA
* * *
427 TACTTTAAGGAACCGAAGATATAAAAGTACTCGATAAAGTTTGAAAAGTTCAGAAGTTCAGCCAA
1 TACTTTAAGGAACCGAAGTTATAAAAGTACTCGAAAAAGTTTGAAAAGTTCGGAAGTTCAGCCAA
*
492 GAACCAAGAAAGAAACAATTCTCACAGAAATAAAATTTTAATC-CAAGAACCAAAAGTTGTTTAC
66 GAACCAAG-AAGAAACAATTCTCACAGAAATAAAATTTTAATCAAAAG-ACCAAAAGTTGTTTAC
* * ** * * * *
556 AAAATGATAGATTATTTGGACCAAATGATGTGATTTCTCGAGAATGGAATGTTTGAAAAATTCTT
129 AAAATGACAGATTATTTAGACCAAATGATGCAATTTCCCAAGAATGAAATGTTCGAAAAATTCTT
* * * *
621 CGACGAAATGGATCGTCTGGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTG
194 CGAAGAAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTA
* *
686 CAAAGTTTGGAAGTT-TGGCCTAGAACCAAGAGTGAGATAATTATCACGTAAATAAGTTTTTAAT
259 CAAAG--T--AAGTTCT-GCCTAGAACCAAGAGTGAAATAATTCTCACGTAAATAAGTTTTTAAT
* * *
750 TCAAAGACCAAAAGTTTTTTACAAAAGGATTAATTATTTGGACCAAATGATGTGATTTCTCGAAA
319 TCAAAGACCAAAAGTTTTTTACAAAAGGACTAATTATTTGGACCAAATGATGCGATTTCCCGAAA
* ** * * * *
815 ATGGAATGTTTGAAAAATTGCTCGAAGGAATTGATCATCTTGAA
384 ATAGAATGTTCAAAAAATTGATCGAAGAAATCGATCGTCTTGAA
* *
859 TACTTTAAGGAACCGAAGTTATAAAAGTACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAA
1 TACTTTAAGGAACCGAAGTTATAAAAGTACTCGAAAAAGTTTGAAAAGTTCGGAAGTTCAGCCAA
* * *
924 GAACCAAG-AGAAACAATTCCCACATAAATAAATTTTTAATCAAAAGACCAAAAGTTGTTTACAA
66 GAACCAAGAAGAAACAATTCTCACAGAAATAAAATTTTAATCAAAAGACCAAAAGTTGTTTACAA
* * *
988 AATGACAGATTATTTAGACCAAATGATGCAATTT-CCAAGAATAAAATGTTCGAAATATTGTTCG
131 AATGACAGATTATTTAGACCAAATGATGCAATTTCCCAAGAATGAAATGTTCGAAAAATTCTTCG
**
1052 AAGAAATGGATCATCTTGAATACTTTAAGGAAAAAAAGTTATAAAAGAACTCGAAAAAGTTTACA
196 AAGAAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTACA
* *
1117 AAGTAAGTTCTGCCTAGAACCATGAGTGAAATAATTCTTACGTAAATAAGTTTTTAATTCAAAGA
261 AAGTAAGTTCTGCCTAGAACCAAGAGTGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * * *
1182 TCGAAAGTTTTTTGCAAAAGGACTAATTATTTGGACCAAATGATGCGATTTCCCGAGAATAGAAT
326 CCAAAAGTTTTTTACAAAAGGACTAATTATTTGGACCAAATGATGCGATTTCCCGAAAATAGAAT
* *
1247 GTTCAAAAAATTGATCGAAGGAATCAATCGTCTTGAA
391 GTTCAAAAAATTGATCGAAGAAATCGATCGTCTTGAA
* * * * *
1284 TATTTTAAGGAATCGAAGATATAAAAGTACTCGACAAAGTTTGAAAAGTTCGGAAGTTCAACCAA
1 TACTTTAAGGAACCGAAGTTATAAAAGTACTCGAAAAAGTTTGAAAAGTTCGGAAGTTCAGCCAA
* * *
1349 GAACCAAGAAAGAAACAATTCTCACAGAAATTAAATTTTAATCCAAAGAGCAAAAGTTGTTTACA
66 GAACCAAG-AAGAAACAATTCTCACAGAAATAAAATTTTAATCAAAAGACCAAAAGTTGTTTACA
* * * *
1414 AAATGACAGATTATTTGGACCAAATGATGCGATTTCCCAAGAATGGAATGCTC-AGAAAATTGC-
130 AAATGACAGATTATTTAGACCAAATGATGCAATTTCCCAAGAATGAAATGTTCGA-AAAATT-CT
* * ** * * * * *
1477 TCGAAGGAATCGATTGTCATGAATACTCTAAGGAACCGAAGCTATAAAAGAACTTGAAAAAGTTT
193 TCGAAGAAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTT
* * * * * * * *
1542 GAC-TAGTTTGGAAGTTCTGCCAAGAACAAAGAGAGAAACATTTCTCACATAAATAATTTTTTAA
258 -ACAAAG--T--AAGTTCTGCCTAGAACCAAGAGTGAAATAATTCTCACGTAAATAAGTTTTTAA
* * * * * * * *
1606 TCCAAAGACAAAAAGTTGTTTACAAAATGAC-AGCTTATTTGGACCTAATGATGCAATTTCTCGA
318 TTCAAAGACCAAAAGTTTTTTACAAAAGGACTA-ATTATTTGGACCAAATGATGCGATTTCCCGA
* ** * *
1670 GAACGGAATGTTCAAAAAATTGTTCGAA-AAATTAGATCGTCTTGAA
382 AAATAGAATGTTCAAAAAATTGATCGAAGAAA-TCGATCGTCTTGAA
* * * * ** *
1716 TACTTTAAGGAACCAAAGTTATAAAAG-AGCTCGAAACAGTTTGCAAAGTTTGGAAGTTTGGCCT
1 TACTTTAAGGAACCGAAGTTATAAAAGTA-CTCGAAAAAGTTTGAAAAGTTCGGAAGTTCAGCCA
* * **
1780 AGAACCAAGAGAGAAATAATTCTTAC-GTAAATAAGTTTTTAATTCAAAA
65 AGAACCAAGA-AGAAACAATTCTCACAG-AAATAAAATTTTAA-TCAAAA
1829 ACCGAA
Statistics
Matches: 1210, Mismatches: 163, Indels: 51
0.85 0.11 0.04
Matches are distributed among these distances:
425 209 0.17
426 70 0.06
427 88 0.07
428 236 0.20
429 87 0.07
430 80 0.07
431 10 0.01
432 425 0.35
433 5 0.00
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (427 bp):
TACTTTAAGGAACCGAAGTTATAAAAGTACTCGAAAAAGTTTGAAAAGTTCGGAAGTTCAGCCAA
GAACCAAGAAGAAACAATTCTCACAGAAATAAAATTTTAATCAAAAGACCAAAAGTTGTTTACAA
AATGACAGATTATTTAGACCAAATGATGCAATTTCCCAAGAATGAAATGTTCGAAAAATTCTTCG
AAGAAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTACA
AAGTAAGTTCTGCCTAGAACCAAGAGTGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
CCAAAAGTTTTTTACAAAAGGACTAATTATTTGGACCAAATGATGCGATTTCCCGAAAATAGAAT
GTTCAAAAAATTGATCGAAGAAATCGATCGTCTTGAA
Found at i:1658 original size:857 final size:858
Alignment explanation
Indices: 1--1828 Score: 2796
Period size: 857 Copynumber: 2.1 Consensus size: 858
*
1 TACTTTAAGGAACCGAAGTTATAAAAGTACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGACCAA
1 TACTTTAAGGAACCGAAGTTATAAAAGTACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAA
*
66 GAACCAAGAGAAACAATTCCCACAAAAATAAATTTTTAATCAAAAGACCAAAAGTTGTTTACAAA
66 GAACCAAGAGAAACAATTCCCACATAAATAAATTTTTAATCAAAAGACCAAAAGTTGTTTACAAA
*
131 ATGACAAATTATTTAGACCAAATGATGCAATTTCCCAAGAACGAAATGTTCGAAAAATTGTTCGA
131 ATGACAAATTATTTAGACCAAATGATGCAATTTCCCAAGAACAAAATGTTCGAAAAATTGTTCGA
**
196 AGAAATGGATCATCTTGAATACTTTAAGGTCAAAAAGTTATAAAAGAACTCGAAAAAGTGTACAA
196 AGAAATGGATCATCTTGAATACTTTAAGGAAAAAAAGTTATAAAAGAACTCGAAAAAGTGTACAA
*
261 AGTAAGTTCTGCCTAGAACCACGAGTGAAATAATTCTTATGTAAATAAGTTTTTAATTCAAAGAT
261 AGTAAGTTCTGCCTAGAACCACGAGTGAAATAATTCTTACGTAAATAAGTTTTTAATTCAAAGAT
*
326 CGAAAGTTTTTTGCAAAAGGACTAATTATTTGGACCAAATGATATGATTTCCCGAAAATAGAATG
326 CGAAAGTTTTTTGCAAAAGGACTAATTATTTGGACCAAATGATACGATTTCCCGAAAATAGAATG
*
391 TTCAAAAAATTAATCGAAGAAATCGATCGTCTTGAATACTTTAAGGAACCGAAGATATAAAAGTA
391 TTCAAAAAATTAATCGAAGAAATCAATCGTCTTGAATACTTTAAGGAACCGAAGATATAAAAGTA
* *
456 CTCGATAAAGTTTGAAAAGTTCAGAAGTTCAGCCAAGAACCAAGAAAGAAACAATTCTCACAGAA
456 CTCGACAAAGTTTGAAAAGTTCAGAAGTTCAACCAAGAACCAAGAAAGAAACAATTCTCACAGAA
*
521 ATAAAATTTTAATCCAAGAACCAAAAGTTGTTTACAAAATGATAGATTATTTGGACCAAATGATG
521 ATAAAATTTTAATCCAAGAACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATG
* * * ** * * *
586 TGATTTCTCGAGAATGGAATGTTTGAAAAATTCTTCGACGAAATGGATCGTCTGGAATACTTTAA
586 CGATTTCCCAAGAATGGAATGTCAGAAAAATTCTTCGAAGAAATCGATCGTCTGGAATACTCTAA
* * *
651 GGAACCAAAGTTATAAAAGAACTCGAAAAAGTTTGCAAAGTTTGGAAGTTTGGCCTAGAACCAAG
651 GGAACCAAAGCTATAAAAGAACTCGAAAAAGTTTGCAAAGTTTGGAAGTTTGGCCAAGAACAAAG
* * * * * * * *
716 AGTGAGATAATTATCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTTTTTACAAAAGGATT
716 AGAGAAACAATTATCACATAAATAAGTTTTTAATCCAAAGACAAAAAGTTGTTTACAAAAGGATC
** * ** *
781 AATTATTTGGACCAAATGATGTGATTTCTCGAAAATGGAATGTTTGAAAAATTGCTCGAAGGAAT
781 AATTATTTGGACCAAATGATGCAATTTCTCGAAAACGGAATGTTCAAAAAATTGCTCGAA-AAAT
846 T-GATCATCTTGAA
845 TAGATCATCTTGAA
859 TACTTTAAGGAACCGAAGTTATAAAAGTACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAA
1 TACTTTAAGGAACCGAAGTTATAAAAGTACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAA
924 GAACCAAGAGAAACAATTCCCACATAAATAAATTTTTAATCAAAAGACCAAAAGTTGTTTACAAA
66 GAACCAAGAGAAACAATTCCCACATAAATAAATTTTTAATCAAAAGACCAAAAGTTGTTTACAAA
* * *
989 ATGACAGATTATTTAGACCAAATGATGCAATTT-CCAAGAATAAAATGTTCGAAATATTGTTCGA
131 ATGACAAATTATTTAGACCAAATGATGCAATTTCCCAAGAACAAAATGTTCGAAAAATTGTTCGA
*
1053 AGAAATGGATCATCTTGAATACTTTAAGGAAAAAAAGTTATAAAAGAACTCGAAAAAGTTTACAA
196 AGAAATGGATCATCTTGAATACTTTAAGGAAAAAAAGTTATAAAAGAACTCGAAAAAGTGTACAA
*
1118 AGTAAGTTCTGCCTAGAACCATGAGTGAAATAATTCTTACGTAAATAAGTTTTTAATTCAAAGAT
261 AGTAAGTTCTGCCTAGAACCACGAGTGAAATAATTCTTACGTAAATAAGTTTTTAATTCAAAGAT
* *
1183 CGAAAGTTTTTTGCAAAAGGACTAATTATTTGGACCAAATGATGCGATTTCCCGAGAATAGAATG
326 CGAAAGTTTTTTGCAAAAGGACTAATTATTTGGACCAAATGATACGATTTCCCGAAAATAGAATG
* * * *
1248 TTCAAAAAATTGATCGAAGGAATCAATCGTCTTGAATATTTTAAGGAATCGAAGATATAAAAGTA
391 TTCAAAAAATTAATCGAAGAAATCAATCGTCTTGAATACTTTAAGGAACCGAAGATATAAAAGTA
*
1313 CTCGACAAAGTTTGAAAAGTTCGGAAGTTCAACCAAGAACCAAGAAAGAAACAATTCTCACAGAA
456 CTCGACAAAGTTTGAAAAGTTCAGAAGTTCAACCAAGAACCAAGAAAGAAACAATTCTCACAGAA
* *
1378 ATTAAATTTTAATCCAA-AGAGCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGAT
521 ATAAAATTTTAATCCAAGA-ACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGAT
* *
1442 GCGATTTCCCAAGAATGGAATGCTCAG-AAAATTGC-TCGAAGGAATCGATTGTCAT-GAATACT
585 GCGATTTCCCAAGAATGGAATG-TCAGAAAAATT-CTTCGAAGAAATCGATCGTC-TGGAATACT
* * *
1504 CTAAGGAACCGAAGCTATAAAAGAACTTGAAAAAGTTTG-ACTAGTTTGGAAGTTCT-GCCAAGA
647 CTAAGGAACCAAAGCTATAAAAGAACTCGAAAAAGTTTGCA-AAGTTTGGAAGTT-TGGCCAAGA
* * *
1567 ACAAAGAGAGAAACATTTCTCACATAAATAATTTTTTAATCCAAAGACAAAAAGTTGTTTACAAA
710 ACAAAGAGAGAAACAATTATCACATAAATAAGTTTTTAATCCAAAGACAAAAAGTTGTTTACAAA
* * * * *
1632 ATGA-CAGCTTATTTGGACCTAATGATGCAATTTCTCGAGAACGGAATGTTCAAAAAATTGTTCG
775 AGGATCA-ATTATTTGGACCAAATGATGCAATTTCTCGAAAACGGAATGTTCAAAAAATTGCTCG
*
1696 AAAAATTAGATCGTCTTGAA
839 AAAAATTAGATCATCTTGAA
* * * *
1716 TACTTTAAGGAACCAAAGTTATAAAAG-AGCTCGAAACAGTTTG-CAAAGTTTGGAAGTTTGGCC
1 TACTTTAAGGAACCGAAGTTATAAAAGTA-CTCGAAAAAGTTTGAC-AAGTTCGGAAGTTCGGCC
* * ** * *
1779 TAGAACCAAGAGAGAAATAATTCTTACGTAAATAAGTTTTTAATTCAAAA
64 AAGAACC-A-AGAGAAACAATTCCCACATAAATAAATTTTTAA-TCAAAA
1829 ACCGAA
Statistics
Matches: 883, Mismatches: 74, Indels: 24
0.90 0.08 0.02
Matches are distributed among these distances:
856 9 0.01
857 674 0.76
858 166 0.19
859 28 0.03
860 6 0.01
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (858 bp):
TACTTTAAGGAACCGAAGTTATAAAAGTACTCGAAAAAGTTTGACAAGTTCGGAAGTTCGGCCAA
GAACCAAGAGAAACAATTCCCACATAAATAAATTTTTAATCAAAAGACCAAAAGTTGTTTACAAA
ATGACAAATTATTTAGACCAAATGATGCAATTTCCCAAGAACAAAATGTTCGAAAAATTGTTCGA
AGAAATGGATCATCTTGAATACTTTAAGGAAAAAAAGTTATAAAAGAACTCGAAAAAGTGTACAA
AGTAAGTTCTGCCTAGAACCACGAGTGAAATAATTCTTACGTAAATAAGTTTTTAATTCAAAGAT
CGAAAGTTTTTTGCAAAAGGACTAATTATTTGGACCAAATGATACGATTTCCCGAAAATAGAATG
TTCAAAAAATTAATCGAAGAAATCAATCGTCTTGAATACTTTAAGGAACCGAAGATATAAAAGTA
CTCGACAAAGTTTGAAAAGTTCAGAAGTTCAACCAAGAACCAAGAAAGAAACAATTCTCACAGAA
ATAAAATTTTAATCCAAGAACCAAAAGTTGTTTACAAAATGACAGATTATTTGGACCAAATGATG
CGATTTCCCAAGAATGGAATGTCAGAAAAATTCTTCGAAGAAATCGATCGTCTGGAATACTCTAA
GGAACCAAAGCTATAAAAGAACTCGAAAAAGTTTGCAAAGTTTGGAAGTTTGGCCAAGAACAAAG
AGAGAAACAATTATCACATAAATAAGTTTTTAATCCAAAGACAAAAAGTTGTTTACAAAAGGATC
AATTATTTGGACCAAATGATGCAATTTCTCGAAAACGGAATGTTCAAAAAATTGCTCGAAAAATT
AGATCATCTTGAA
Done.