Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005508.1 Kokia drynarioides strain JFW-HI SEQ_119579, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6237
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36


Found at i:5192 original size:20 final size:19

Alignment explanation


    Indices: 5151--5192  Score: 50
    Period size: 20  Copynumber: 2.2  Consensus size: 19

       5141 ACATATGTTC

                               
       5151 AAATCATTTCAATATATAT
          1 AAATCATTTCAATATATAT

                               * 
       5170 AAAT-ATTTGCAACTATATTT
          1 AAATCATTT-CAA-TATATAT

               
       5190 AAA
          1 AAA

       5193 AAAAAATTAT


Statistics
Matches: 20,  Mismatches: 1, Indels: 3
        0.83            0.04        0.12

Matches are distributed among these distances:
  18    4  0.20
  19    7  0.35
  20    9  0.45

ACGTcount: A:0.48, C:0.10, G:0.02, T:0.40


Consensus pattern (19 bp):   
AAATCATTTCAATATATAT
Done.