Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005521.1 Kokia drynarioides strain JFW-HI SEQ_119605, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 615

Length: 1026
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32


Found at i:274 original size:22 final size:22

Alignment explanation


    Indices: 249--298  Score: 100
    Period size: 22  Copynumber: 2.3  Consensus size: 22

        239 TTTTACTGTT

                                  
        249 CATTTTAAATCATTTCGATGTA
          1 CATTTTAAATCATTTCGATGTA

                                  
        271 CATTTTAAATCATTTCGATGTA
          1 CATTTTAAATCATTTCGATGTA

                  
        293 CATTTT
          1 CATTTT

        299 TTAACTTTGA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   28  1.00

ACGTcount: A:0.30, C:0.14, G:0.08, T:0.48


Consensus pattern (22 bp):   
CATTTTAAATCATTTCGATGTA
Done.