Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005522.1 Kokia drynarioides strain JFW-HI SEQ_119606, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2358
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31


Found at i:79 original size:22 final size:22

Alignment explanation


    Indices: 52--101  Score: 100
    Period size: 22  Copynumber: 2.3  Consensus size: 22

         42 TCAAAGTTAA

                                  
         52 AAAATGTACATCGAAATGATTT
          1 AAAATGTACATCGAAATGATTT

                                  
         74 AAAATGTACATCGAAATGATTT
          1 AAAATGTACATCGAAATGATTT

                  
         96 AAAATG
          1 AAAATG

        102 AACAGTAAAA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   28  1.00

ACGTcount: A:0.48, C:0.08, G:0.14, T:0.30


Consensus pattern (22 bp):   
AAAATGTACATCGAAATGATTT

Done.