Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000553.1 Kokia drynarioides strain JFW-HI SEQ_111460, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 814

Length: 1358
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36


Found at i:197 original size:23 final size:23

Alignment explanation


    Indices: 167--308  Score: 132
    Period size: 23  Copynumber: 6.2  Consensus size: 23

        157 AAGTACTTAA

                                   
        167 CAGTAAGCACACACAGTGC-AAT
          1 CAGTAAGCACACACAGTGCGAAT

                                    
        189 CCAGTAAGCACACACAGTGC-AAT
          1 -CAGTAAGCACACACAGTGCGAAT

                 *  *    *  *  *   
        212 CAGTAGGCGCACATAGCGCAAAT
          1 CAGTAAGCACACACAGTGCGAAT

                                   *
        235 CAGTAAGCACACGA-AGTGCGAAA
          1 CAGTAAGCACAC-ACAGTGCGAAT

                                   *
        258 CAGTAAGCACACGA-AGTGCGAAA
          1 CAGTAAGCACAC-ACAGTGCGAAT

              *      *              
        281 CAATAAGCATACACAGTGCTGAA-
          1 CAGTAAGCACACACAGTGC-GAAT

                 
        304 CAGTA
          1 CAGTA

        309 GGCGCACTAG


Statistics
Matches: 103,  Mismatches: 12, Indels: 8
        0.84            0.10        0.07

Matches are distributed among these distances:
  22   16  0.16
  23   83  0.81
  24    4  0.04

ACGTcount: A:0.41, C:0.25, G:0.22, T:0.13


Consensus pattern (23 bp):   
CAGTAAGCACACACAGTGCGAAT
Done.