Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01005532.1 Kokia drynarioides strain JFW-HI SEQ_119623, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 990
Length: 1651
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Found at i:804 original size:216 final size:215
Alignment explanation
Indices: 5--1651 Score: 1773
Period size: 216 Copynumber: 7.6 Consensus size: 215
1 AACG
*
5 ACTTTTGGTCTTTGAATGAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGA
1 ACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGA
* * * * * *
70 ACTTCTGAACTTGGACAAATTTTACCAGTTCATCTATAACATTC-GTTCCTTAAAGTATACATGA
66 ACTTCTGAACTT-GAGAACTTTTACGAGTTCTTTTATAAC-TTCAGTTCCTTAAAGTATTCATGA
* * * * * * * * *
134 CAATCCTTTCCTTCAAACAATTTTTCAAACATTCCATGCTCAGGAAAACGCATCGTTTGATCTAA
129 CAATCCATTCCTTCGAGCAATTTTTCGAACATTCCATACTCGGGAAATCGCATCATTTGGTCTAA
199 ATAGTTTGTCATTTTCTAAACA
194 ATAGTTTGTCATTTTCTAAACA
* * * * * *
221 ACTTTGGGTCTATAAATTAAAATCTTATTTACGTGAGAGTTGTTTCTCTCTTTGTTCTTGGATGA
1 ACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGA
* * *
286 ACTT-TCGAACTTGAAGAAGTTTTACGAGTTCTTTTAAAAATTCAGTTCCTTAAAGTATTCATGA
66 ACTTCT-GAACTTG-AGAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCATGA
** * * * * * *
350 TGATTCATTCCTTCAAGCAATTTTTGGAA-AATCCA-AGCACGGGAAATCGCGTCATTAT-GTCT
129 CAATCCATTCCTTCGAGCAATTTTTCGAACATTCCATA-CTCGGGAAATCGCATCATT-TGGTCT
412 AAATAGTTTGTCATTTTCTAAACA
192 AAATAGTTTGTCATTTTCTAAACA
* * *
436 ACTTTTGGTCTTTGAATT-AAAACCTATTTATGTGAGAGTTGTTTCTCTCTTGGTTCTTAGACGA
1 ACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGA
** * * * * * *
500 ACTTCCAAACTTGACATACTTTTACGAGTTCCTCTATAACTGCTA-TTTCTTAAAGTATTCAAGA
66 ACTTCTGAACTTGAGA-ACTTTTACGAGTTCTTTTATAACTTC-AGTTCCTTAAAGTATTCATGA
* * *
564 CAATCCATTCCTTAGAGTAATTTTTTGAACATTCCATACTCGGGAAATCGCATCATTTGGTCTAA
129 CAATCCATTCCTTCGAGCAATTTTTCGAACATTCCATACTCGGGAAATCGCATCATTTGGTCTAA
*
629 ATAGTTT-TCCATTTTGTAAACA
194 ATAGTTTGT-CATTTTCTAAACA
* * * * * * *
651 ACTTTTAGTCTTTAAATTAAAATCTTATTTATGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAA
1 ACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGA
* * * * * * *
716 ACTTCTGAACTTGATGAAGTTTCACAAGTTCTTTTAAAACTTCAGTTCCTTAAACTATTCATTAT
66 ACTTCTGAACTTGA-GAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCATGAC
* * * * * * *
781 GATACATTCCTTCGAGCAATTTTTCGAACATTCCATACACGCGG-AATTGTATCTTTTTGTCTAA
130 AATCCATTCCTTCGAGCAATTTTTCGAACATTCCATACTCG-GGAAATCGCATCATTTGGTCTAA
*
845 ATAGTTTTTCATTTTCTAAACA
194 ATAGTTTGTCATTTTCTAAACA
* * * * *
867 ACTATTGGTCTTTCAATTAAAAACCTATTTACGTGAGAGTTGTTTTTCTCTTGGTTCTTAGG-TG
1 ACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTT-GGACG
** ** * ** *
931 AACTTCCAAACTTGACGAACTTTTACGAGTTCTTCAATAACTTCGGTTTTTTAAAGTATTCAGGA
65 AACTTCTGAACTTGA-GAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCATGA
* * * * *
996 -AATCCATTCCTTAGAGCAATTTTTTGAACATTCCATGCTCGGTAAATCGCATCATTTGGTATAA
129 CAATCCATTCCTTCGAGCAATTTTTCGAACATTCCATACTCGGGAAATCGCATCATTTGGTCTAA
** *
1060 ATACATTGTCATTTTCTAAACT
194 ATAGTTTGTCATTTTCTAAACA
* * * *
1082 ACTTTTGGTCTTTGAATGAAAAACTTATTTACGTGATAGTTGTTTTTATCTTGGTTCTTGGACGA
1 ACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGA
* * *
1147 ACTTCCGAACTTG-GCAAACTTTTACGAGTTCTTTTATAACTTAAGTTCCATAAAGTATTCATGA
66 ACTTCTGAACTTGAG--AACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCATGA
* * * *
1211 CGATCCATTCCTTCGAGCAATTTTTCGAACATTCCA-AGCACAGGAAATCGCTTCATTAT-GTCT
129 CAATCCATTCCTTCGAGCAATTTTTCGAACATTCCATA-CTCGGGAAATCGCATCATT-TGGTCT
*
1274 AAATTGTTTGTCATTTTCTAAACA
192 AAATAGTTTGTCATTTTCTAAACA
* * ** * * * *
1298 ACTGTTGCTCTTTGAATTAAATTCCTATTTATGTGAGAGTTGTTTCTCTCTTGGTTCTTAGATGA
1 ACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGA
* * * * * *
1363 ACTAAC-AAACTTGAAATACTTTTACGAGTTCTTCTATAACTTC-GATTTCTTAAAGTATTCAAG
66 ACT-TCTGAACTTGAGA-ACTTTTACGAGTTCTTTTATAACTTCAG-TTCCTTAAAGTATTCATG
** * * *
1426 ACAATCCATTCCTTAAAGTAATTTTTTGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTA
128 ACAATCCATTCCTTCGAGCAATTTTTCGAACATTCCATACTCGGGAAATCGCATCATTTGGTCTA
** *
1491 AAT-GCTTTGTCATTTTGAAAATA
193 AATAG-TTTGTCATTTTCTAAACA
* * *
1514 ACTTTTGGTCTTTGAATGAAAAACTTATTTACGTAAGAGTTGTTTCTCTCTTGGTTCTTGGACAA
1 ACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGA
* * * *
1579 ACTTTTGAACTTGGAAAACTTTTACGAGTTCATCTATAACTTTC-GTTCCTTAAAGTATTCATGA
66 ACTTCTGAACTT-GAGAACTTTTACGAGTTCTTTTATAAC-TTCAGTTCCTTAAAGTATTCATGA
1643 CAATCCATT
129 CAATCCATT
Statistics
Matches: 1181, Mismatches: 215, Indels: 70
0.81 0.15 0.05
Matches are distributed among these distances:
213 3 0.00
214 114 0.10
215 310 0.26
216 738 0.62
217 16 0.01
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (215 bp):
ACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGA
ACTTCTGAACTTGAGAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCATGACA
ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATACTCGGGAAATCGCATCATTTGGTCTAAAT
AGTTTGTCATTTTCTAAACA
Found at i:1111 original size:431 final size:430
Alignment explanation
Indices: 9--1642 Score: 2070
Period size: 431 Copynumber: 3.8 Consensus size: 430
1 AACGACTT
* * *
9 TTGGTCTTTGAATGAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGAACTT
1 TTGGTCTTTGAATTAAAAACCTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTAGACGAACTT
** * * * * * *
74 CTGAACTTGGACA-AATTTTACCAGTTCATCTATAACATTCG-TTCCTTAAAGTATACATGACAA
66 CCAAACTT-GACATACTTTTACGAGTTCTTCTATAAC-TTCGATTTCTTAAAGTATTCAAGACAA
* * ** * * * *
137 TCCTTTCCTTCA-AACAATTTTTCAAACATTCCATGCTCAGGAAAACGCATCGTTTGATCTAAAT
129 TCCATTCCTT-AGAGCAATTTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * * * *
201 AGTTTGTCATTTTCTAAACAACTTTGGGTCTATAAATTAAAATCTTATTTACGTGAGAGTTGTTT
193 ACTTTGTCATTTTCTAAACAACTTTTGGTCTTTAAATGAAAAACTTATTTACGTGAGAGTTGTTT
* ** *
266 CTCTCTTTGTTCTTGGATGAACTT-TCGAACTTGAAGAAGTTTTACGAGTTCTTTTAAAAATTCA
258 CTCTCTTGGTTCTTGGACAAACTTCT-GAACTTGAAGAAGTTTTACGAGTTCTTTTAAAACTTCA
* * * *
330 GTTCCTTAAAGTATTCATGATGATTCATTCCTTCAAGCAATTTTTGGAA-AATCCAAGCACGGGA
322 GTTCCTTAAAGTATTCATGATGATACATTCCTTCGAGCAATTTTTCGAACATTCCAAGCACGGG-
* *
394 AATCGCGTCATTATGTCTAAATAGTTTGTCATTTTCTAAACAACTT
386 AATCG-TTCATTATGTCTAAATAGTTTGTCATTTTCTAAACAACTA
*
440 TTGGTCTTTGAATT-AAAACCTATTTATGTGAGAGTTGTTTCTCTCTTGGTTCTTAGACGAACTT
1 TTGGTCTTTGAATTAAAAACCTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTAGACGAACTT
* * *
504 CCAAACTTGACATACTTTTACGAGTTCCTCTATAACTGCTATTTCTTAAAGTATTCAAGACAATC
66 CCAAACTTGACATACTTTTACGAGTTCTTCTATAACTTCGATTTCTTAAAGTATTCAAGACAATC
* * *
569 CATTCCTTAGAGTAATTTTTTGAACATTCCATACTCGGGAAATCGCATCATTTGGTCTAAATAGT
131 CATTCCTTAGAGCAATTTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATACT
* * * * * *
634 TT-TCCATTTTGTAAACAACTTTTAGTCTTTAAATTAAAATCTTATTTATGTGAGAATTGTTTCT
196 TTGT-CATTTTCTAAACAACTTTTGGTCTTTAAATGAAAAACTTATTTACGTGAGAGTTGTTTCT
* * * *
698 CTCTTTGTTCTTGGACAAACTTCTGAACTTGATGAAGTTTCACAAGTTCTTTTAAAACTTCAGTT
260 CTCTTGGTTCTTGGACAAACTTCTGAACTTGAAGAAGTTTTACGAGTTCTTTTAAAACTTCAGTT
* *
763 CCTTAAACTATTCATTATGATACATTCCTTCGAGCAATTTTTCGAACATTCCATA-CACGCGGAA
325 CCTTAAAGTATTCATGATGATACATTCCTTCGAGCAATTTTTCGAACATTCCA-AGCACG-GGAA
* * * *
827 TTGTATCTTTTTGTCTAAATAGTTTTTCATTTTCTAAACAACTA
388 TCGT-TCATTATGTCTAAATAGTTTGTCATTTTCTAAACAACTA
* * **
871 TTGGTCTTTCAATTAAAAACCTATTTACGTGAGAGTTGTTTTTCTCTTGGTTCTTAGGTGAACTT
1 TTGGTCTTTGAATTAAAAACCTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTAGACGAACTT
* * * *
936 CCAAACTTGACGA-ACTTTTACGAGTTCTTCAATAACTTCGGTTTTTTAAAGTATTCAGGA-AAT
66 CCAAACTTGAC-ATACTTTTACGAGTTCTTCTATAACTTCGATTTCTTAAAGTATTCAAGACAAT
* *
999 CCATTCCTTAGAGCAATTTTTTGAACATTCCATGCTCGGTAAATCGCATCATTTGGTATAAATAC
130 CCATTCCTTAGAGCAATTTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAC
* * * * *
1064 ATTGTCATTTTCTAAACTACTTTTGGTCTTTGAATGAAAAACTTATTTACGTGATAGTTGTTTTT
195 TTTGTCATTTTCTAAACAACTTTTGGTCTTTAAATGAAAAACTTATTTACGTGAGAGTTGTTTCT
* * * * * * *
1129 ATCTTGGTTCTTGGACGAACTTCCGAACTTGGCA-AACTTTTACGAGTTCTTTTATAACTTAAGT
260 CTCTTGGTTCTTGGACAAACTTCTGAACTT-GAAGAAGTTTTACGAGTTCTTTTAAAACTTCAGT
* * * *
1193 TCCATAAAGTATTCATGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCAAGCACAGGAAA
324 TCCTTAAAGTATTCATGATGATACATTCCTTCGAGCAATTTTTCGAACATTCCAAGCAC-GGGAA
* *
1258 TCGCTTCATTATGTCTAAATTGTTTGTCATTTTCTAAACAACTG
388 TCG-TTCATTATGTCTAAATAGTTTGTCATTTTCTAAACAACTA
* ** * * *
1302 TTGCTCTTTGAATTAAATTCCTATTTATGTGAGAGTTGTTTCTCTCTTGGTTCTTAGATGAACTA
1 TTGGTCTTTGAATTAAAAACCTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTAGACGAACTT
* *
1367 ACAAACTTGAAATACTTTTACGAGTTCTTCTATAACTTCGATTTCTTAAAGTATTCAAGACAATC
66 CCAAACTTGACATACTTTTACGAGTTCTTCTATAACTTCGATTTCTTAAAGTATTCAAGACAATC
* * * *
1432 CATTCCTTAAAGTAATTTTTTGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATGCT
131 CATTCCTTAGAGCAATTTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATACT
** * * *
1497 TTGTCATTTTGAAAATAACTTTTGGTCTTTGAATGAAAAACTTATTTACGTAAGAGTTGTTTCTC
196 TTGTCATTTTCTAAACAACTTTTGGTCTTTAAATGAAAAACTTATTTACGTGAGAGTTGTTTCTC
* * * * *
1562 TCTTGGTTCTTGGACAAACTTTTGAACTTGGAA-AACTTTTACGAGTTCATCTATAACTTTC-GT
261 TCTTGGTTCTTGGACAAACTTCTGAACTT-GAAGAAGTTTTACGAGTTCTTTTAAAAC-TTCAGT
1625 TCCTTAAAGTATTCATGA
324 TCCTTAAAGTATTCATGA
1643 CAATCCATT
Statistics
Matches: 1048, Mismatches: 136, Indels: 37
0.86 0.11 0.03
Matches are distributed among these distances:
429 8 0.01
430 303 0.29
431 441 0.42
432 293 0.28
433 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (430 bp):
TTGGTCTTTGAATTAAAAACCTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTAGACGAACTT
CCAAACTTGACATACTTTTACGAGTTCTTCTATAACTTCGATTTCTTAAAGTATTCAAGACAATC
CATTCCTTAGAGCAATTTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATACT
TTGTCATTTTCTAAACAACTTTTGGTCTTTAAATGAAAAACTTATTTACGTGAGAGTTGTTTCTC
TCTTGGTTCTTGGACAAACTTCTGAACTTGAAGAAGTTTTACGAGTTCTTTTAAAACTTCAGTTC
CTTAAAGTATTCATGATGATACATTCCTTCGAGCAATTTTTCGAACATTCCAAGCACGGGAATCG
TTCATTATGTCTAAATAGTTTGTCATTTTCTAAACAACTA
Found at i:1438 original size:647 final size:639
Alignment explanation
Indices: 12--1651 Score: 1843
Period size: 647 Copynumber: 2.5 Consensus size: 639
2 ACGACTTTTG
* * * * *
12 GTCTTTGAATGAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGAACTTCTG
1 GTCTTTAAATTAAAATCCTATTTATGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGAACTTCTG
* * * *
77 AACTTGGACAAATTTTACCAGTTCATCTATAACATTCG-TTCCTTAAAGTATACATGACAATCCT
66 AACTT-GACAAATTTTACAAGTTCTTCTATAAC-TTCGATTCCTTAAAGTATTCATGACAATCCA
* * * * * *
141 TTCCTTCAAACAATTTTTCAAACATTCCATGCTCAGGAAAACGCATCGTTTGATCTAAATAGTTT
129 TTCCTTCAAGCAATTTTTCGAACATTCCATACTC-GGGAATCGCATCTTTTG-TCTAAATAGTTT
* *
206 GTCATTTTCTAAACAACTTTGGGTCTATAAATTAAAATCTTATTTACGTGAGAGTTGTTTCTCTC
192 GTCATTTTCTAAACAACTTT-GGTCTTTAAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTC
* * * *
271 TTTGTTCTTGGATGAACTTTCGAACTTGAAGAAGTTTTACGAGTTCTTTTAA-AAATTCAGTTCC
256 TTGGTTCTTGGATGAACTTTCGAACTTG-AGAACTTTTACGAGTTC-TTCAATAACTTC-GTTCC
** *
335 TTAAAGTATTCATGATGATTCATTCCTTCAAGCAATTTTTGGAAAATCCAAGCACGGGAAATCGC
318 TTAAAGTATTCATGACAATCCATTCCTTCAAGCAATTTTTGGAAAATCCAAGCACGGGAAATCGC
* * ** *
400 GTCATTATGTCTAAATAGTTTGTCATTTTCTAAACAACTTTTGGTCTTTGAATTAAAACCTATTT
383 ATCATTATGTATAAATACATTGTCATTTTCTAAACAACTTTTGGTCTTTGAATAAAAACCTATTT
* * *
465 ATGTGAGAGTTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGACATACTTTTACGAGTT
448 ACGTGAGAGTTGTTTCTATCTTGGTTCTTAGACGAACTTCCAAACTTGACAAACTTTTACGAGTT
* * * *
530 CCTCTATAACTGCTATTTCTTAAAGTATTCAAGACAATCCATTCCTTAGAGTAATTTTTTGAACA
513 CCTCTATAACT-CTATTCCATAAAGTATTCAAGACAATCCATTCCTTAGAGCAATTTTTCGAACA
* * * *
595 TTCCATACTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTCCATTTTGTAAACAACTTTTA
577 TTCCATACACAGGAAATCGCATCATTTGGTCTAAATAGTTTTCCATTTTCTAAACAACTGTTA
* * * *
658 GTCTTTAAATTAAAATCTTATTTATGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACTTCTG
1 GTCTTTAAATTAAAATCCTATTTATGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGAACTTCTG
* * * * * * * ** *
723 AACTTGATGAAGTTTCACAAGTTCTTTTAAAACTTC-AGTTCCTTAAACTATTCATTATGATACA
66 AACTTGA-CAAATTTTACAAGTTCTTCTATAACTTCGA-TTCCTTAAAGTATTCATGACAATCCA
* * * *
787 TTCCTTCGAGCAATTTTTCGAACATTCCATACACGCGGAATTGTATCTTTTTGTCTAAATAGTTT
129 TTCCTTCAAGCAATTTTTCGAACATTCCATACTCG-GGAATCGCATC-TTTTGTCTAAATAGTTT
* * * *
852 TTCATTTTCTAAACAACTATTGGTCTTTCAATTAAAAACCTATTTACGTGAGAGTTGTTTTTCTC
192 GTCATTTTCTAAACAACT-TTGGTCTTTAAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTC
* * **
917 TTGGTTCTTAGG-TGAACTTCCAAACTTGACGAACTTTTACGAGTTCTTCAATAACTTCGGTTTT
256 TTGGTTCTT-GGATGAACTTTCGAACTTGA-GAACTTTTACGAGTTCTTCAATAACTTC-GTTCC
* * * * * *
981 TTAAAGTATTCAGGA-AATCCATTCCTT-AGAGCAATTTTTTGAACATTCCATGCTCGGTAAATC
318 TTAAAGTATTCATGACAATCCATTCCTTCA-AGCAATTTTTGGAA-AATCCAAGCACGGGAAATC
* *
1044 GCATCATT-TGGTATAAATACATTGTCATTTTCTAAACTACTTTTGGTCTTTGAATGAAAAACTT
381 GCATCATTAT-GTATAAATACATTGTCATTTTCTAAACAACTTTTGGTCTTTGAAT-AAAAACCT
* * * * *
1108 ATTTACGTGATAGTTGTTTTTATCTTGGTTCTTGGACGAACTTCCGAACTTGGCAAACTTTTACG
444 ATTTACGTGAGAGTTGTTTCTATCTTGGTTCTTAGACGAACTTCCAAACTTGACAAACTTTTACG
* * * * *
1173 AGTTCTTTTATAACT-TAAGTTCCATAAAGTATTCATGACGATCCATTCCTTCGAGCAATTTTTC
509 AGTTCCTCTATAACTCT-A-TTCCATAAAGTATTCAAGACAATCCATTCCTTAGAGCAATTTTTC
* *
1237 GAACATTCCA-AGCACAGGAAATCGCTTCATTAT-GTCTAAATTGTTTGT-CATTTTCTAAACAA
572 GAACATTCCATA-CACAGGAAATCGCATCATT-TGGTCTAAATAGTTT-TCCATTTTCTAAACAA
1299 CTGTT-
634 CTGTTA
* * * * *
1304 GCTCTTTGAATTAAATTCCTATTTATGTGAGAGTTGTTTCTCTCTTGGTTCTTAGATGAACTAAC
1 G-TCTTTAAATTAAAATCCTATTTATGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGAACT-TC
* * * *
1369 -AAACTTGA-AATACTTTTACGAGTTCTTCTATAACTTCGATTTCTTAAAGTATTCAAGACAATC
64 TGAACTTGACAA-A-TTTTACAAGTTCTTCTATAACTTCGATTCCTTAAAGTATTCATGACAATC
* * * * *
1432 CATTCCTTAAAGTAATTTTTTGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAAT-GC
127 CATTCCTTCAAGCAATTTTTCGAACATTCCATACTCGGG-AATCGCATC-TTTTGTCTAAATAG-
** * * * *
1496 TTTGTCATTTTGAAAATAACTTTTGGTCTTTGAATGAAAAACTTATTTACGTAAGAGTTGTTTCT
189 TTTGTCATTTTCTAAACAAC-TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAGTTGTTTCT
** * * * *
1561 CTCTTGGTTCTTGGACAAACTTTTGAACTTGGAAAACTTTTACGAGTTCATCTATAACTTTCGTT
253 CTCTTGGTTCTTGGATGAACTTTCGAACTT-GAGAACTTTTACGAGTTCTTCAATAAC-TTCGTT
1626 CCTTAAAGTATTCATGACAATCCATT
316 CCTTAAAGTATTCATGACAATCCATT
Statistics
Matches: 828, Mismatches: 136, Indels: 58
0.81 0.13 0.06
Matches are distributed among these distances:
644 1 0.00
645 38 0.05
646 334 0.40
647 437 0.53
648 18 0.02
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (639 bp):
GTCTTTAAATTAAAATCCTATTTATGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGAACTTCTG
AACTTGACAAATTTTACAAGTTCTTCTATAACTTCGATTCCTTAAAGTATTCATGACAATCCATT
CCTTCAAGCAATTTTTCGAACATTCCATACTCGGGAATCGCATCTTTTGTCTAAATAGTTTGTCA
TTTTCTAAACAACTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGT
TCTTGGATGAACTTTCGAACTTGAGAACTTTTACGAGTTCTTCAATAACTTCGTTCCTTAAAGTA
TTCATGACAATCCATTCCTTCAAGCAATTTTTGGAAAATCCAAGCACGGGAAATCGCATCATTAT
GTATAAATACATTGTCATTTTCTAAACAACTTTTGGTCTTTGAATAAAAACCTATTTACGTGAGA
GTTGTTTCTATCTTGGTTCTTAGACGAACTTCCAAACTTGACAAACTTTTACGAGTTCCTCTATA
ACTCTATTCCATAAAGTATTCAAGACAATCCATTCCTTAGAGCAATTTTTCGAACATTCCATACA
CAGGAAATCGCATCATTTGGTCTAAATAGTTTTCCATTTTCTAAACAACTGTTA
Done.