genome.fa.s5533.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01005533.1 Kokia drynarioides strain JFW-HI SEQ_119624, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80538

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--25	2	12.5	2	100	0	50	48	0	0	52	1.00
4617--4759	30	4.7	30	78	6	137	38	11	2	46	1.55
4658--4961	30	10.1	30	72	12	162	37	21	2	38	1.66
4658--4961	60	5.1	59	74	11	237	37	21	2	38	1.66
4658--4963	120	2.5	116	79	11	298	37	21	2	38	1.66
4658--5061	120	3.4	119	78	11	294	37	21	2	38	1.68
6913--6950	2	19.0	2	88	0	58	44	0	0	55	0.99
8792--8820	14	2.0	15	93	6	51	41	0	0	58	0.98
9410--9443	18	1.9	17	94	5	59	50	0	0	50	1.00
10199--10244	22	2.0	23	87	4	67	45	0	0	54	0.99
10620--10649	8	3.8	8	90	0	51	26	13	0	60	1.34
18575--18643	30	2.3	30	92	0	111	10	31	33	24	1.89
19116--19143	13	2.2	13	100	0	56	32	7	14	46	1.71
21639--21695	20	2.9	18	73	14	51	35	12	7	45	1.69
21669--21711	20	2.2	20	82	0	50	34	16	6	41	1.75
21681--21759	26	3.0	26	75	0	86	44	18	3	32	1.68
27739--28045	59	5.2	58	81	5	309	38	4	25	31	1.76
27768--28046	117	2.4	117	81	8	336	38	5	25	31	1.77
27739--28079	117	2.9	114	74	13	309	38	4	25	31	1.76
28004--28203	59	3.4	58	76	10	190	39	4	23	33	1.75
27969--28204	89	2.7	88	80	12	227	38	4	24	32	1.76
27739--28195	30	15.5	29	69	18	223	38	4	25	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29196--29238	13	3.5	13	84	12	56	32	0	0	67	0.91
29196--29275	33	2.4	33	77	8	83	35	2	1	61	1.18
29926--30012	17	5.0	17	81	9	95	52	6	1	39	1.36
29926--29974	11	4.4	11	79	5	62	48	4	0	46	1.20
29928--29981	6	9.3	6	82	8	67	51	5	0	42	1.25
29932--30024	17	5.4	17	78	5	78	54	8	1	35	1.38
33607--33793	97	1.9	97	84	6	254	37	13	17	32	1.88
34078--34349	29	9.3	29	70	17	161	37	2	27	31	1.72
34078--34389	58	5.4	57	85	4	360	37	2	27	32	1.72
34078--34389	117	2.7	116	84	5	416	37	2	27	32	1.72
34317--34400	27	3.0	26	71	15	62	39	1	25	34	1.64
35655--35747	3	30.0	3	74	10	71	31	4	3	61	1.31
36473--36590	6	20.0	6	68	13	75	50	2	3	44	1.32
36560--36604	17	2.6	18	89	3	65	55	2	4	37	1.32
36483--36569	17	4.9	17	74	12	77	51	3	3	41	1.35
39746--39803	28	2.2	26	87	6	80	44	1	3	50	1.29
39964--40013	16	3.1	16	82	8	57	52	4	8	36	1.50
45458--45521	17	3.8	17	77	8	76	39	0	4	56	1.20
45485--45531	6	8.0	6	76	4	51	44	0	2	53	1.12
45457--45537	34	2.3	35	87	2	119	40	0	3	55	1.17
45468--45517	23	2.2	22	82	13	57	42	0	6	52	1.26
45485--45547	17	3.7	16	79	12	72	46	0	1	52	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45457--45547	35	2.6	33	81	11	103	42	0	3	53	1.17
46258--46296	3	13.0	3	100	0	78	66	0	0	33	0.92
47230--47382	29	5.2	30	71	14	97	30	22	5	40	1.78
47282--47697	59	7.2	59	78	10	380	32	24	5	38	1.78
47282--47416	29	4.6	29	76	14	118	32	25	3	37	1.74
59088--59569	49	9.8	49	74	11	344	39	19	25	15	1.92
59091--59350	99	2.6	99	82	8	325	40	19	25	15	1.90
59088--59609	98	5.3	95	80	8	389	39	19	24	16	1.92
59100--59511	147	2.8	146	80	10	435	39	19	24	15	1.91
59196--59576	147	2.6	146	81	5	394	38	20	24	16	1.92
59286--59675	98	4.0	98	83	1	383	40	18	23	17	1.91
60043--60150	17	6.3	17	83	5	137	41	0	2	54	1.21
60071--60134	6	11.0	6	78	6	69	42	1	1	54	1.19
60042--60096	28	2.0	28	85	0	74	38	0	3	58	1.16
60849--60875	3	9.0	3	100	0	54	66	0	0	33	0.92
61827--61970	30	4.8	30	73	9	105	36	22	3	37	1.72
61868--62112	58	4.2	59	81	3	273	31	26	4	37	1.78
61956--62112	29	5.4	30	69	17	91	31	27	5	36	1.79
61862--62086	29	7.6	29	70	12	111	30	24	4	39	1.76
61863--62112	59	4.3	59	79	6	251	31	26	4	37	1.77
78072--78339	146	1.8	147	83	3	362	29	15	13	41	1.86
78537--78571	2	17.5	2	100	0	70	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79502--79611	40	2.8	40	86	5	168	37	19	24	19	1.94
79646--79962	41	7.7	41	80	2	289	24	22	26	26	2.00
79646--79953	123	2.5	122	79	9	340	24	22	26	26	2.00

Tables:   1

The End!