Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005539.1 Kokia drynarioides strain JFW-HI SEQ_119632, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 660

Length: 1101
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34


Found at i:128 original size:11 final size:12

Alignment explanation


    Indices: 108--144  Score: 51
    Period size: 11  Copynumber: 3.2  Consensus size: 12

         98 TGTTTAATTA

                        
        108 ATTTTAAATTGC
          1 ATTTTAAATTGC

                       *
        120 ATTTT-AATT-A
          1 ATTTTAAATTGC

                        
        130 ATTTTAAATTGC
          1 ATTTTAAATTGC

               
        142 ATT
          1 ATT

        145 ATGTGGTTGG


Statistics
Matches: 21,  Mismatches: 2, Indels: 4
        0.78            0.07        0.15

Matches are distributed among these distances:
  10    5  0.24
  11    8  0.38
  12    8  0.38

ACGTcount: A:0.35, C:0.05, G:0.05, T:0.54


Consensus pattern (12 bp):   
ATTTTAAATTGC

Found at i:128 original size:22 final size:22

Alignment explanation


    Indices: 100--144  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

         90 TTACCTAGTG

                                  
        100 TTTAATTAATTTTAAATTGCAT
          1 TTTAATTAATTTTAAATTGCAT

                                  
        122 TTTAATTAATTTTAAATTGCAT
          1 TTTAATTAATTTTAAATTGCAT

             
        144 T
          1 T

        145 ATGTGGTTGG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.36, C:0.04, G:0.04, T:0.56


Consensus pattern (22 bp):   
TTTAATTAATTTTAAATTGCAT
Done.