Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005540.1 Kokia drynarioides strain JFW-HI SEQ_119633, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1881
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31


Found at i:1804 original size:22 final size:22

Alignment explanation


    Indices: 1776--1822  Score: 94
    Period size: 22  Copynumber: 2.1  Consensus size: 22

       1766 TGGTTTTGTT

                                  
       1776 GGACCCATGGGTCAAATAAAAC
          1 GGACCCATGGGTCAAATAAAAC

                                  
       1798 GGACCCATGGGTCAAATAAAAC
          1 GGACCCATGGGTCAAATAAAAC

               
       1820 GGA
          1 GGA

       1823 GCATTTCTCT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   25  1.00

ACGTcount: A:0.40, C:0.21, G:0.26, T:0.13


Consensus pattern (22 bp):   
GGACCCATGGGTCAAATAAAAC
Done.