Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005553.1 Kokia drynarioides strain JFW-HI SEQ_119660, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2492
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38


Found at i:1336 original size:17 final size:17

Alignment explanation


    Indices: 1316--1352  Score: 56
    Period size: 17  Copynumber: 2.2  Consensus size: 17

       1306 TTTATAGATG

                             
       1316 ATATTAATTATTAGAAA
          1 ATATTAATTATTAGAAA

                  *      *   
       1333 ATATTATTTATTATAAA
          1 ATATTAATTATTAGAAA

               
       1350 ATA
          1 ATA

       1353 AAATATGATT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46


Consensus pattern (17 bp):   
ATATTAATTATTAGAAA
Done.