Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005556.1 Kokia drynarioides strain JFW-HI SEQ_119663, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 768

Length: 1280
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37


Found at i:100 original size:23 final size:23

Alignment explanation


    Indices: 76--191  Score: 120
    Period size: 23  Copynumber: 5.3  Consensus size: 23

         66 TGCTGGGCAA

                     *            *
         76 CAGAGAGCATACAAAGTGCTAAA
          1 CAGAGAGCACACAAAGTGCTAAT

                   *               
         99 CAGAGAGTACACAAA--G-T-AT
          1 CAGAGAGCACACAAAGTGCTAAT

               *                   
        118 ---TGAGCACACAAAGTGCTAAT
          1 CAGAGAGCACACAAAGTGCTAAT

                         *         
        138 CAGAGAGCACACACAGTGCTAAT
          1 CAGAGAGCACACAAAGTGCTAAT

            *            *         
        161 TAGAGAGCACACACAGTGCTAAT
          1 CAGAGAGCACACAAAGTGCTAAT

                    
        184 CAGAGAGC
          1 CAGAGAGC

        192 GCGCTAGTGT


Statistics
Matches: 77,  Mismatches: 9, Indels: 14
        0.77            0.09        0.14

Matches are distributed among these distances:
  16   10  0.13
  18    1  0.01
  19    2  0.03
  20    3  0.04
  21    1  0.01
  23   60  0.78

ACGTcount: A:0.42, C:0.21, G:0.22, T:0.15


Consensus pattern (23 bp):   
CAGAGAGCACACAAAGTGCTAAT
Done.