Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005559.1 Kokia drynarioides strain JFW-HI SEQ_119667, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6069
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.32


Found at i:1604 original size:125 final size:125

Alignment explanation


    Indices: 1381--1611  Score: 356
    Period size: 125  Copynumber: 1.8  Consensus size: 125

       1371 TTTTTCATGC

                 *                        *                         *        
       1381 AATTTTTTTTCTTGTATGCTTGTTTTGTTTGCATTGTGGAATTAGTGTTCTTAGATTATCACAGA
          1 AATTTATTTTCTTGTATGCTTGTTTTGTTTACATTGTGGAATTAGTGTTCTTAGATGATCACAGA

            * *                *   *    *                               
       1446 TGTGGCCGAAAGCTAAACCGGTGTGGCAGCTTTTAGATAATGGTTTCTCTATAGATTTTG
         66 CGCGGCCGAAAGCTAAACCAGTGAGGCACCTTTTAGATAATGGTTTCTCTATAGATTTTG

                                                                     *       
       1506 AATTTATTTTCTTGTATGCTTGTTTTGTTTACATTGTGGAATTAGTGTTCTTAGATGGTCACA-A
          1 AATTTATTTTCTTGTATGCTTGTTTTGTTTACATTGTGGAATTAGTGTTCTTAGATGATCACAGA

                                        *             
       1570 GCGCGGCCGAAAGCTAAACCAGTGAGGCTCCTTTTAGATAAT
         66 -CGCGGCCGAAAGCTAAACCAGTGAGGCACCTTTTAGATAAT

       1612 AGATTTTGAA


Statistics
Matches: 95,  Mismatches: 10, Indels: 2
        0.89            0.09        0.02

Matches are distributed among these distances:
 124    1  0.01
 125   94  0.99

ACGTcount: A:0.23, C:0.13, G:0.22, T:0.42


Consensus pattern (125 bp):   
AATTTATTTTCTTGTATGCTTGTTTTGTTTACATTGTGGAATTAGTGTTCTTAGATGATCACAGA
CGCGGCCGAAAGCTAAACCAGTGAGGCACCTTTTAGATAATGGTTTCTCTATAGATTTTG

Found at i:3579 original size:19 final size:19

Alignment explanation


    Indices: 3555--3592  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       3545 AGTATACAAC

                               
       3555 ATATATCAGATGAAGCAAG
          1 ATATATCAGATGAAGCAAG

                               
       3574 ATATATCAGATGAAGCAAG
          1 ATATATCAGATGAAGCAAG

       3593 TTTTCCATAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.47, C:0.11, G:0.21, T:0.21


Consensus pattern (19 bp):   
ATATATCAGATGAAGCAAG
Done.