Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000556.1 Kokia drynarioides strain JFW-HI SEQ_111464, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4338
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33


Found at i:3974 original size:10 final size:8

Alignment explanation


    Indices: 3943--3991  Score: 73
    Period size: 8  Copynumber: 6.2  Consensus size: 8

       3933 CATCACTCAA

                    
       3943 CATTCT-T
          1 CATTCTCT

                    
       3950 CATTCTCT
          1 CATTCTCT

                    
       3958 CATTCTCT
          1 CATTCTCT

                    
       3966 CATTCTCT
          1 CATTCTCT

               *    
       3974 CATCCTCT
          1 CATTCTCT

               *    
       3982 CATCCTCT
          1 CATTCTCT

              
       3990 CA
          1 CA

       3992 ATCCTTTTTC


Statistics
Matches: 40,  Mismatches: 1, Indels: 1
        0.95            0.02        0.02

Matches are distributed among these distances:
   7    6  0.15
   8   34  0.85

ACGTcount: A:0.14, C:0.41, G:0.00, T:0.45


Consensus pattern (8 bp):   
CATTCTCT

Found at i:3981 original size:24 final size:23

Alignment explanation


    Indices: 3925--3991  Score: 73
    Period size: 24  Copynumber: 2.8  Consensus size: 23

       3915 CACTTTCAAA

                              *      
       3925 TCATCC-CTCATCACTCAACATTCT
          1 TCATCCTCTCATC-CTC-TCATTCT

                *       *          
       3949 TCATTCTCTCATTCTCTCATTCT
          1 TCATCCTCTCATCCTCTCATTCT

                                
       3972 CTCATCCTCTCATCCTCTCA
          1 -TCATCCTCTCATCCTCTCA

       3992 ATCCTTTTTC


Statistics
Matches: 36,  Mismatches: 5, Indels: 4
        0.80            0.11        0.09

Matches are distributed among these distances:
  23    6  0.17
  24   25  0.69
  25    5  0.14

ACGTcount: A:0.18, C:0.42, G:0.00, T:0.40


Consensus pattern (23 bp):   
TCATCCTCTCATCCTCTCATTCT
Done.