Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01005566.1 Kokia drynarioides strain JFW-HI SEQ_119676, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 88749
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:4178 original size:17 final size:18
Alignment explanation
Indices: 4158--4191 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
4148 AATTAGTGAA
4158 AAATTATA-AAAAATTAG
1 AAATTATAGAAAAATTAG
4175 AAATTATAGAAAAATTA
1 AAATTATAGAAAAATTA
4192 TAAAAAAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (18 bp):
AAATTATAGAAAAATTAG
Found at i:4186 original size:28 final size:27
Alignment explanation
Indices: 4143--4198 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 27
4133 TAAAAATATT
4143 ATTAAAATTAGTGAAAAATTATAAAAA
1 ATTAAAATTAGTGAAAAATTATAAAAA
4170 ATTAGAAATTA-TAGAAAAATTATAAAAA
1 ATTA-AAATTAGT-GAAAAATTATAAAAA
4198 A
1 A
4199 ACTATAGTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (27 bp):
ATTAAAATTAGTGAAAAATTATAAAAA
Found at i:4189 original size:11 final size:11
Alignment explanation
Indices: 4146--4205 Score: 51
Period size: 11 Copynumber: 5.9 Consensus size: 11
4136 AAATATTATT
4146 AAAATTAGT-GA
1 AAAATTA-TAGA
4157 AAAATTATA-A
1 AAAATTATAGA
4167 AAAA-T-TAG-
1 AAAATTATAGA
4175 -AAATTATAGA
1 AAAATTATAGA
*
4185 AAAATTATAAA
1 AAAATTATAGA
*
4196 AAAACTATAG
1 AAAATTATAG
4206 TAAAGTAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
7 3 0.08
8 3 0.08
9 4 0.10
10 6 0.15
11 24 0.60
ACGTcount: A:0.63, C:0.02, G:0.08, T:0.27
Consensus pattern (11 bp):
AAAATTATAGA
Found at i:13879 original size:18 final size:18
Alignment explanation
Indices: 13856--13898 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
13846 AATTATCGTG
13856 GAAGGTGGAGGCATTACA
1 GAAGGTGGAGGCATTACA
13874 GAAGGTGGAGGCATTACA
1 GAAGGTGGAGGCATTACA
13892 GAAGGTG
1 GAAGGTG
13899 TCGTAGGTCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.33, C:0.09, G:0.42, T:0.16
Consensus pattern (18 bp):
GAAGGTGGAGGCATTACA
Found at i:14602 original size:21 final size:20
Alignment explanation
Indices: 14553--14604 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
14543 TGTGCTAGTT
*
14553 CTACCGATACAAGTATGATTT
1 CTACCGATACAAGTATGA-TA
*
14574 CTAACGATACAAGTCATGCA-A
1 CTACCGATACAAGT-ATG-ATA
14595 CTACCGATAC
1 CTACCGATAC
14605 CAAAAACTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 22 0.85
22 3 0.12
23 1 0.04
ACGTcount: A:0.37, C:0.25, G:0.13, T:0.25
Consensus pattern (20 bp):
CTACCGATACAAGTATGATA
Found at i:18495 original size:36 final size:36
Alignment explanation
Indices: 18406--18498 Score: 105
Period size: 36 Copynumber: 2.6 Consensus size: 36
18396 AGTAAGTACT
* * *
18406 TCTATTCCATCTGATGTGTCTGAGTCTGCATCCTCA
1 TCTATTACATCTGTTGTGTCTGAGTCTACATCCTCA
* * * *
18442 TCTATTCCACCTCTTGTGTTTGAGTCTACATCCTCA
1 TCTATTACATCTGTTGTGTCTGAGTCTACATCCTCA
* *
18478 TTTGTTACATCTGTTGTGTCT
1 TCTATTACATCTGTTGTGTCT
18499 CTTCCATCTA
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
36 46 1.00
ACGTcount: A:0.15, C:0.26, G:0.15, T:0.44
Consensus pattern (36 bp):
TCTATTACATCTGTTGTGTCTGAGTCTACATCCTCA
Found at i:20047 original size:14 final size:16
Alignment explanation
Indices: 20028--20059 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
20018 CAAGGATCCT
20028 AAGCCC-AATTA-CAA
1 AAGCCCAAATTACCAA
20042 AAGCCCAAATTACCAA
1 AAGCCCAAATTACCAA
20058 AA
1 AA
20060 AAGACCCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 5 0.31
16 5 0.31
ACGTcount: A:0.53, C:0.28, G:0.06, T:0.12
Consensus pattern (16 bp):
AAGCCCAAATTACCAA
Found at i:20577 original size:18 final size:19
Alignment explanation
Indices: 20556--20592 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
20546 AGTAAATATT
20556 TATTTAAT-ATTTATTATA
1 TATTTAATAATTTATTATA
20574 TATTTAATACATTTATTAT
1 TATTTAATA-ATTTATTAT
20593 TTCCTTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
20 9 0.53
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (19 bp):
TATTTAATAATTTATTATA
Found at i:21342 original size:26 final size:25
Alignment explanation
Indices: 21304--21353 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
21294 GAGAAGGGAC
21304 AAAAAAAAAAGAGAG-AGAATAGAGA
1 AAAAAAAAAAGAGAGAAGAA-AGAGA
21329 AAAAAAAAAGAGAGAGAAGAAAGAG
1 AAAAAAAAA-AGAGAGAAGAAAGAG
21354 TTTTTGTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 9 0.39
26 10 0.43
27 4 0.17
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (25 bp):
AAAAAAAAAAGAGAGAAGAAAGAGA
Found at i:21926 original size:30 final size:30
Alignment explanation
Indices: 21892--22102 Score: 152
Period size: 29 Copynumber: 7.2 Consensus size: 30
21882 TAAAAATTGT
* **
21892 ATTTTGACCCTCGAACTTTTTGAAAATCAC
1 ATTTTTACCCTCGAACTTTTCAAAAATCAC
* * * * *
21922 ATTTTCACCC-CTAAACTTCTCCAAAATTAC
1 ATTTTTACCCTC-GAACTTTTCAAAAATCAC
* *
21952 A-TTTTACCC-CTAAACTTTCCAAAAATCAC
1 ATTTTTACCCTC-GAACTTTTCAAAAATCAC
* *
21981 ATTTTGA-CCTCGAAC-TTCCAAAAATCAC
1 ATTTTTACCCTCGAACTTTTCAAAAATCAC
*
22009 ATTTTTACCCTCGAAC-TTTAAAAAATCAC
1 ATTTTTACCCTCGAACTTTTCAAAAATCAC
* * **
22038 ATTTTTACCATTGTTCTTCTT--AAAATCAC
1 ATTTTTACCCTCGAACTT-TTCAAAAATCAC
* *
22067 ATTTTTACCCTCAAACTTCTT-AAAAATTAC
1 ATTTTTACCCTCGAACTT-TTCAAAAATCAC
22097 ATTTTT
1 ATTTTT
22103 GCCCCCAAAC
Statistics
Matches: 148, Mismatches: 26, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
28 19 0.13
29 85 0.57
30 42 0.28
31 2 0.01
ACGTcount: A:0.34, C:0.26, G:0.03, T:0.37
Consensus pattern (30 bp):
ATTTTTACCCTCGAACTTTTCAAAAATCAC
Found at i:22043 original size:29 final size:30
Alignment explanation
Indices: 21914--22121 Score: 173
Period size: 29 Copynumber: 7.1 Consensus size: 30
21904 GAACTTTTTG
* *
21914 AAAATCACATTTTCACCC-CTAAACTTCTCC
1 AAAATCACATTTTTACCCTC-AAACTTCTCA
*
21944 AAAATTACA-TTTTACCC-CTAAACTT-TCCA
1 AAAATCACATTTTTACCCTC-AAACTTCT-CA
* *
21973 AAAATCACATTTTGA-CCTCGAACTTC-CA
1 AAAATCACATTTTTACCCTCAAACTTCTCA
* *
22001 AAAATCACATTTTTACCCTCGAACTT-TAA
1 AAAATCACATTTTTACCCTCAAACTTCTCA
* **** *
22030 AAAATCACATTTTTACCATTGTTCTTCT-T
1 AAAATCACATTTTTACCCTCAAACTTCTCA
*
22059 AAAATCACATTTTTACCCTCAAACTTCTTA
1 AAAATCACATTTTTACCCTCAAACTTCTCA
* * *
22089 AAAATTACATTTTTGCCCCCAAACTTCT-A
1 AAAATCACATTTTTACCCTCAAACTTCTCA
22118 AAAA
1 AAAA
22122 GCATAATTTT
Statistics
Matches: 148, Mismatches: 22, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
28 17 0.11
29 92 0.62
30 39 0.26
ACGTcount: A:0.36, C:0.27, G:0.02, T:0.35
Consensus pattern (30 bp):
AAAATCACATTTTTACCCTCAAACTTCTCA
Found at i:24452 original size:3 final size:3
Alignment explanation
Indices: 24391--24433 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
24381 ATTATGGCAA
24391 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
24434 TCAATCCATG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:24768 original size:24 final size:24
Alignment explanation
Indices: 24736--24794 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
24726 AGGACTTAAT
* *
24736 TAAAATTAAAAATA-AATTAAAGGC
1 TAAAATTAAAAACAGAA-TAAAGGA
24760 TAAAATTAAAAACAGAATAAAGGA
1 TAAAATTAAAAACAGAATAAAGGA
*
24784 TTAAATTAAAA
1 TAAAATTAAAA
24795 TAATATAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 29 0.94
25 2 0.06
ACGTcount: A:0.64, C:0.03, G:0.08, T:0.24
Consensus pattern (24 bp):
TAAAATTAAAAACAGAATAAAGGA
Found at i:37960 original size:52 final size:52
Alignment explanation
Indices: 37898--37998 Score: 202
Period size: 52 Copynumber: 1.9 Consensus size: 52
37888 TGATGCTTTG
37898 AGTTTGGTCGTTTTATCTAGGTCGGGTTTAAGGTGTTACATTTAGTGGTTTA
1 AGTTTGGTCGTTTTATCTAGGTCGGGTTTAAGGTGTTACATTTAGTGGTTTA
37950 AGTTTGGTCGTTTTATCTAGGTCGGGTTTAAGGTGTTACATTTAGTGGT
1 AGTTTGGTCGTTTTATCTAGGTCGGGTTTAAGGTGTTACATTTAGTGGT
37999 ATTAGAGCTA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.17, C:0.08, G:0.30, T:0.46
Consensus pattern (52 bp):
AGTTTGGTCGTTTTATCTAGGTCGGGTTTAAGGTGTTACATTTAGTGGTTTA
Found at i:42831 original size:36 final size:36
Alignment explanation
Indices: 42790--42894 Score: 129
Period size: 36 Copynumber: 2.9 Consensus size: 36
42780 GGTAACAAGC
*
42790 ATGACCTTTGGGTCAACAGGGAGAAAAATGAGCATA
1 ATGACCTTTGGGTCAACAGGGAGAAAAATGAACATA
* * * *
42826 ATGACCTTTGGGTCAACAGGAAGGAAAACGAACATC
1 ATGACCTTTGGGTCAACAGGGAGAAAAATGAACATA
* * *
42862 ATGTCCTTTGTGGTCAATAGGGAGTAAAATGAA
1 ATGACCTTTG-GGTCAACAGGGAGAAAAATGAA
42895 TAACGATCAC
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
36 40 0.69
37 18 0.31
ACGTcount: A:0.37, C:0.14, G:0.27, T:0.22
Consensus pattern (36 bp):
ATGACCTTTGGGTCAACAGGGAGAAAAATGAACATA
Found at i:43581 original size:116 final size:116
Alignment explanation
Indices: 43387--43638 Score: 389
Period size: 116 Copynumber: 2.2 Consensus size: 116
43377 GGTAGAACTC
*
43387 ATGCTTGTATCGGTAGAAGTACAGGGTAAGAGAGAGGTTATTCTCTGCCTTGAGTTGTTTCGGTA
1 ATGCTTGTATCGGTAGAAGTACAGGGTAAGAGAGAGGTTATTCTCTGACTTGAGTTGTTTCGGTA
* * * *
43452 GTTGTATATCAGGTAT-TGATAGTTCTGTACATTGAGGTATCGGTAGTTTAA
66 GTTGTATAACAGGTATCAG-TAGTTCTGTACATAGAGGTATCGATAGTTTAA
* * *
43503 ATGCTTGTATCGGTAAAAGTACAGGGTAGGAGAGAGGTTGTTCTCTGACTTGAGTTGTTTCGGTA
1 ATGCTTGTATCGGTAGAAGTACAGGGTAAGAGAGAGGTTATTCTCTGACTTGAGTTGTTTCGGTA
*
43568 GTTGTATAACAGGTATCAGTAGTTCTGTATATAGAGGTATCGATAGTTTAA
66 GTTGTATAACAGGTATCAGTAGTTCTGTACATAGAGGTATCGATAGTTTAA
* *
43619 ATACTTGAATCGGTAGAAGT
1 ATGCTTGTATCGGTAGAAGT
43639 TGCAGAGTAG
Statistics
Matches: 123, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
116 122 0.99
117 1 0.01
ACGTcount: A:0.26, C:0.10, G:0.28, T:0.36
Consensus pattern (116 bp):
ATGCTTGTATCGGTAGAAGTACAGGGTAAGAGAGAGGTTATTCTCTGACTTGAGTTGTTTCGGTA
GTTGTATAACAGGTATCAGTAGTTCTGTACATAGAGGTATCGATAGTTTAA
Found at i:43706 original size:21 final size:21
Alignment explanation
Indices: 43682--43726 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
43672 TTAGTATCAC
*
43682 TAGTAATATGACTTGTATCGG
1 TAGTAATATCACTTGTATCGG
** *
43703 TAGTTGTCTCACTTGTATCGG
1 TAGTAATATCACTTGTATCGG
43724 TAG
1 TAG
43727 AATTGTCAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.22, C:0.13, G:0.24, T:0.40
Consensus pattern (21 bp):
TAGTAATATCACTTGTATCGG
Found at i:57168 original size:3 final size:3
Alignment explanation
Indices: 57162--57186 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
57152 TTTAGGTAGT
57162 AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA A
57187 ATAGAAGAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:57346 original size:12 final size:12
Alignment explanation
Indices: 57329--57354 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
57319 AGATTGAGGG
57329 ATTTAGAGATGT
1 ATTTAGAGATGT
57341 ATTTAGAGATGT
1 ATTTAGAGATGT
57353 AT
1 AT
57355 GGCTAACAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (12 bp):
ATTTAGAGATGT
Found at i:58022 original size:21 final size:21
Alignment explanation
Indices: 57998--58037 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
57988 CAACATGGCA
*
57998 AGTTAACTGGTCACATCAGCT
1 AGTTAACTAGTCACATCAGCT
*
58019 AGTTAACTAGTCACGTCAG
1 AGTTAACTAGTCACATCAG
58038 TTTCCCATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (21 bp):
AGTTAACTAGTCACATCAGCT
Found at i:59848 original size:19 final size:20
Alignment explanation
Indices: 59801--59846 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
59791 AAGTTGATTT
* *
59801 TAAAAAATAAATATAAATTA
1 TAAAAAATTAATATAAATGA
59821 TAAAAAATTAATATAAATGA
1 TAAAAAATTAATATAAATGA
59841 TAAAAA
1 TAAAAA
59847 TTTTAAAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (20 bp):
TAAAAAATTAATATAAATGA
Found at i:59893 original size:20 final size:20
Alignment explanation
Indices: 59863--59904 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
59853 AAAGTAAATA
59863 TAAAAATATTTT-TAAGTTT
1 TAAAAATATTTTATAAGTTT
*
59882 TAAAATATATTTTATAATTTT
1 TAAAA-ATATTTTATAAGTTT
59903 TA
1 TA
59905 GAATTATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
20 7 0.35
21 8 0.40
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (20 bp):
TAAAAATATTTTATAAGTTT
Found at i:64595 original size:22 final size:22
Alignment explanation
Indices: 64547--64599 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
64537 TATTTTTTAA
* * *
64547 AATATTTATATTATATTATTTT
1 AATATTTATATTAGATAATATT
64569 AATATTTATATTAGAGTAATATT
1 AATATTTATATTAGA-TAATATT
64592 ATATATTT
1 A-ATATTT
64600 GACATAGATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 14 0.54
23 6 0.23
24 6 0.23
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.57
Consensus pattern (22 bp):
AATATTTATATTAGATAATATT
Found at i:65173 original size:15 final size:17
Alignment explanation
Indices: 65137--65173 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
65127 TTGAATTTTT
65137 TTAATGATAACAAATCA
1 TTAATGATAACAAATCA
*
65154 TTAATG-TATCAAAT-A
1 TTAATGATAACAAATCA
65169 TTAAT
1 TTAAT
65174 ATTTAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 6 0.32
16 7 0.37
17 6 0.32
ACGTcount: A:0.49, C:0.08, G:0.05, T:0.38
Consensus pattern (17 bp):
TTAATGATAACAAATCA
Found at i:68953 original size:71 final size:71
Alignment explanation
Indices: 68832--69031 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 71
68822 TTTCACATAT
* * *
68832 AGTGACTCACGATACTATAGAA-AATCCACAACAAATGCAGGATCTCAGCCATCGGACCAGATTC
1 AGTGACTCACGATGCTGTA-AAGAATCCACAACAAATGCAAGATCTCAGCCATCGGACCAGATTC
68896 ACTTTAC
65 ACTTTAC
* * ** * * *
68903 AGTGACTTACGATGTTGTTGAGAATCCACAACAATTGCAAGATCTTAGCCATCGGACCAGTTTCA
1 AGTGACTCACGATGCTGTAAAGAATCCACAACAAATGCAAGATCTCAGCCATCGGACCAGATTCA
*
68968 CTTTAT
66 CTTTAC
* * * *
68974 AGTGACTCATGATGCTGTAAAGAATCCGCAACAAATGCAAGATCTCAACCATCAGACC
1 AGTGACTCACGATGCTGTAAAGAATCCACAACAAATGCAAGATCTCAGCCATCGGACC
69032 GTTTCCTATT
Statistics
Matches: 107, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
70 1 0.01
71 106 0.99
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.24
Consensus pattern (71 bp):
AGTGACTCACGATGCTGTAAAGAATCCACAACAAATGCAAGATCTCAGCCATCGGACCAGATTCA
CTTTAC
Found at i:73185 original size:18 final size:17
Alignment explanation
Indices: 73143--73185 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
73133 ATTTTAAGTT
*
73143 TATAATATTTTATATTA
1 TATAATTTTTTATATTA
* *
73160 TGTTATTTTTATATATTA
1 TATAATTTTT-TATATTA
73178 TATAATTT
1 TATAATTT
73186 AAAACAAATT
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (17 bp):
TATAATTTTTTATATTA
Found at i:73230 original size:17 final size:17
Alignment explanation
Indices: 73200--73252 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
73190 CAAATTAAAA
*
73200 AATATATAATATTACTAT
1 AATATA-AACATTACTAT
**
73218 AATATAAACATTAAAAT
1 AATATAAACATTACTAT
* *
73235 AATATTAAGATTACTAT
1 AATATAAACATTACTAT
73252 A
1 A
73253 TAAAAAAATG
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
17 22 0.79
18 6 0.21
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.38
Consensus pattern (17 bp):
AATATAAACATTACTAT
Found at i:76428 original size:11 final size:11
Alignment explanation
Indices: 76412--76450 Score: 78
Period size: 11 Copynumber: 3.5 Consensus size: 11
76402 TTAGGGCATG
76412 GTTTTTTCGAA
1 GTTTTTTCGAA
76423 GTTTTTTCGAA
1 GTTTTTTCGAA
76434 GTTTTTTCGAA
1 GTTTTTTCGAA
76445 GTTTTT
1 GTTTTT
76451 ACACGAACGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.15, C:0.08, G:0.18, T:0.59
Consensus pattern (11 bp):
GTTTTTTCGAA
Found at i:77125 original size:29 final size:29
Alignment explanation
Indices: 77035--77172 Score: 90
Period size: 29 Copynumber: 4.8 Consensus size: 29
77025 GCCCGAGGGT
* * * *
77035 AAAACGGTAATTTTGGATACTTCGGGGACG
1 AAAATGGTAATTTTGGAAAGTTCGGGG-CA
* * *
77065 AAAA-GGTAATATTTGGACA-CTCGAGAGC-
1 AAAATGGTAAT-TTTGGAAAGTTCG-GGGCA
77093 AAAATGGTAATTTTGGAAAGTTCGGGGCA
1 AAAATGGTAATTTTGGAAAGTTCGGGGCA
* *
77122 AAAAT-ATAATTATTGGAAAGTTCAAGGG-A
1 AAAATGGTAATT-TTGGAAAGTTC-GGGGCA
*
77151 AAAAT-GTAATTTATGTAAAGTT
1 AAAATGGTAATTT-TGGAAAGTT
77173 TGAGTTTGAG
Statistics
Matches: 90, Mismatches: 10, Indels: 17
0.77 0.09 0.15
Matches are distributed among these distances:
28 20 0.22
29 54 0.60
30 16 0.18
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (29 bp):
AAAATGGTAATTTTGGAAAGTTCGGGGCA
Found at i:77221 original size:30 final size:30
Alignment explanation
Indices: 77186--77272 Score: 131
Period size: 30 Copynumber: 2.9 Consensus size: 30
77176 GTTTGAGGTT
77186 GAGGGTAAAAATGTAATTTTTGTGAAGTTC
1 GAGGGTAAAAATGTAATTTTTGTGAAGTTC
* *
77216 GAGGGTAAAAATGTAATTTTTTGTAAATTTC
1 GAGGGTAAAAATGTAA-TTTTTGTGAAGTTC
77247 -AGAGGTAAAAATGTAATTTTTGTGAA
1 GAG-GGTAAAAATGTAATTTTTGTGAA
77273 ATTTAAAGGT
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
30 27 0.52
31 25 0.48
ACGTcount: A:0.37, C:0.02, G:0.23, T:0.38
Consensus pattern (30 bp):
GAGGGTAAAAATGTAATTTTTGTGAAGTTC
Found at i:77254 original size:31 final size:30
Alignment explanation
Indices: 77186--77276 Score: 130
Period size: 31 Copynumber: 3.0 Consensus size: 30
77176 GTTTGAGGTT
* *
77186 GAGGGTAAAAATGTAATTTTTGTGAAGTTC
1 GAGGGTAAAAATGTAATTTTTGTAAATTTC
77216 GAGGGTAAAAATGTAATTTTTTGTAAATTTC
1 GAGGGTAAAAATGTAA-TTTTTGTAAATTTC
77247 -AGAGGTAAAAATGTAATTTTTGTGAAATTT
1 GAG-GGTAAAAATGTAATTTTTGT-AAATTT
77277 AAAGGTCAAA
Statistics
Matches: 56, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
30 25 0.45
31 31 0.55
ACGTcount: A:0.36, C:0.02, G:0.22, T:0.40
Consensus pattern (30 bp):
GAGGGTAAAAATGTAATTTTTGTAAATTTC
Found at i:77288 original size:30 final size:30
Alignment explanation
Indices: 77193--77391 Score: 124
Period size: 30 Copynumber: 6.7 Consensus size: 30
77183 GTTGAGGGTA
* ** * *
77193 AAAATGTAATTTTTGTGAAGTTCGAGGGTA
1 AAAATGTAATTTTTGTGAAATTTAAAGGTC
* *
77223 AAAATGTAATTTTT-TGTAAATTTCAGAGGTA
1 AAAATGTAATTTTTGTG-AAATTT-AAAGGTC
77254 AAAATGTAATTTTTGTGAAATTTAAAGGTC
1 AAAATGTAATTTTTGTGAAATTTAAAGGTC
* * *
77284 AAAATATGA-TTTTG-GAAAAGTTT-AAGGTT
1 AAAATGTAATTTTTGTG-AAA-TTTAAAGGTC
* * * *
77313 AAAATATAATTTTT-AGAATGTTTAAGGGTC
1 AAAATGTAATTTTTGTGAA-ATTTAAAGGTC
* * **
77343 ATAATATAATTTTT-AAAAAGTTTAAAGGTC
1 AAAATGTAATTTTTGTGAAA-TTTAAAGGTC
*
77373 AAAATGTGATTTTTG-GAAA
1 AAAATGTAATTTTTGTGAAA
77392 ATTCAGGGAC
Statistics
Matches: 136, Mismatches: 22, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
28 1 0.01
29 28 0.21
30 81 0.60
31 24 0.18
32 2 0.01
ACGTcount: A:0.40, C:0.03, G:0.18, T:0.39
Consensus pattern (30 bp):
AAAATGTAATTTTTGTGAAATTTAAAGGTC
Found at i:77337 original size:59 final size:60
Alignment explanation
Indices: 77274--77386 Score: 147
Period size: 59 Copynumber: 1.9 Consensus size: 60
77264 TTTTGTGAAA
* * *
77274 TTTAAAGGTCAAAATATGATTTTGGAAAAGTTT-AAGGTTAAAATATAATTTTTAGAATG
1 TTTAAAGGTCAAAATATAATTTTGAAAAAGTTTAAAGGTCAAAATATAATTTTTAGAATG
* * * * *
77333 TTTAAGGGTCATAATATAATTTTTAAAAAGTTTAAAGGTCAAAATGTGATTTTT
1 TTTAAAGGTCAAAATATAATTTTGAAAAAGTTTAAAGGTCAAAATATAATTTTT
77387 GGAAAATTCA
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
59 28 0.62
60 17 0.38
ACGTcount: A:0.41, C:0.03, G:0.16, T:0.41
Consensus pattern (60 bp):
TTTAAAGGTCAAAATATAATTTTGAAAAAGTTTAAAGGTCAAAATATAATTTTTAGAATG
Found at i:78443 original size:11 final size:11
Alignment explanation
Indices: 78427--78459 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
78417 CTCCTTTTCT
78427 TTTATTTAATA
1 TTTATTTAATA
*
78438 TTTATTAAATA
1 TTTATTTAATA
78449 -TTATTTAATA
1 TTTATTTAATA
78459 T
1 T
78460 ATTTATTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
TTTATTTAATA
Found at i:79116 original size:17 final size:17
Alignment explanation
Indices: 79094--79143 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
79084 AATTTAATTT
79094 AAAATAAATTCAAACTC
1 AAAATAAATTCAAACTC
* * * *
79111 AAAATAAGTTTAAATTT
1 AAAATAAATTCAAACTC
*
79128 AAAGTAAATTCAAACT
1 AAAATAAATTCAAACT
79144 TAAATTAATT
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.04, T:0.30
Consensus pattern (17 bp):
AAAATAAATTCAAACTC
Found at i:79128 original size:34 final size:33
Alignment explanation
Indices: 79084--79157 Score: 105
Period size: 34 Copynumber: 2.2 Consensus size: 33
79074 TTAAAGTTTA
79084 AATTT-AATTTAAAATAAATTCAAACTCAAAAT
1 AATTTAAATTTAAAATAAATTCAAACTCAAAAT
* * *
79116 AAGTTTAAATTTAAAGTAAATTCAAACTTAAATT
1 AA-TTTAAATTTAAAATAAATTCAAACTCAAAAT
79150 AATTTAAA
1 AATTTAAA
79158 ATGAAAATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
32 2 0.05
33 9 0.24
34 26 0.70
ACGTcount: A:0.54, C:0.07, G:0.03, T:0.36
Consensus pattern (33 bp):
AATTTAAATTTAAAATAAATTCAAACTCAAAAT
Found at i:79933 original size:210 final size:208
Alignment explanation
Indices: 79559--80145 Score: 800
Period size: 210 Copynumber: 2.8 Consensus size: 208
79549 TTTTACTAAA
* *** * *
79559 AAGACGGATTTGGTTCACTTCTCTGCGTCTCGTCAGGAAGATGACCATTTTATTGCTTCGACCTG
1 AAGACGGATTTGGTCCACTTCTCTATATCTCATCAGGAAGCTGACCATTTTATTGCTTCGA-CTG
* * * * *
79624 CTTCTCAGTACCTCATCAGGAAGCTGAGGCTCGAAGTTTCT-CTCACATCGAGCTTTGGTTTCGT
65 CTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGTTT-TGCTCACATTGAGCTTT-GTTTCAT
* * * * *
79688 TGATTTGGTCTACTCCTCAGTACCTCATTAAGAAGACGACCGCATCACCTGTTTTGATCCAATTC
128 TGATTTGGTCTACTTCTCAGTATCTCATCAAGAAGACGACCGCATCACATGTTTTAATCCAATTC
* * *
79753 TTTGTGTCTCATTAGG
193 TATGTATCTCATCAGG
*
79769 AAGACGGATTTGGTGCACTTCTCTATATCTCATCAGGAAGCTGACCATTTTATTGCTTCGATCTG
1 AAGACGGATTTGGTCCACTTCTCTATATCTCATCAGGAAGCTGACCATTTTATTGCTTCGA-CTG
* * *
79834 CTTCTCATTATTTCATCAAGAAGCTGGGGTTCGAAGATTTTGCTCACATTGAGCTTTGTTTCATT
65 CTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAG-TTTTGCTCACATTGAGCTTTGTTTCATT
* * **
79899 GATTTGGTCTACTTCTCAGTATCTCATCAAGAAGATGACTGCATCACATGTTTTAATCCGCTTCT
129 GATTTGGTCTACTTCTCAGTATCTCATCAAGAAGACGACCGCATCACATGTTTTAATCCAATTCT
79964 ATGTATCTCATCAGG
194 ATGTATCTCATCAGG
79979 AAGACGGATTTGGTCCACTTCTC-AGTATCTCATCAGGAAGCTGACCATTTTATTGCTTCGACTT
1 AAGACGGATTTGGTCCACTTCTCTA-TATCTCATCAGGAAGCTGACCATTTTATTGCTTCGAC-T
* * *
80043 GCTTCTCAGTATCTCATCAGGAAGATGGGGTTCGAAGTTTCGCTCAAATTGAGCTTTGTTTCATT
64 GCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGTTTTGCTCACATTGAGCTTTGTTTCATT
* * *
80108 GATTTGGTCTACTTCTCTGTATCTTATCAGGAAGACGA
129 GATTTGGTCTACTTCTCAGTATCTCATCAAGAAGACGA
80146 ATTTGGTCCA
Statistics
Matches: 335, Mismatches: 38, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
209 62 0.19
210 256 0.76
211 17 0.05
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (208 bp):
AAGACGGATTTGGTCCACTTCTCTATATCTCATCAGGAAGCTGACCATTTTATTGCTTCGACTGC
TTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGTTTTGCTCACATTGAGCTTTGTTTCATTGA
TTTGGTCTACTTCTCAGTATCTCATCAAGAAGACGACCGCATCACATGTTTTAATCCAATTCTAT
GTATCTCATCAGG
Found at i:80144 original size:160 final size:160
Alignment explanation
Indices: 79959--80302 Score: 546
Period size: 160 Copynumber: 2.1 Consensus size: 160
79949 TTTTAATCCG
* *
79959 CTTCTATGTATCTCATCAGGAAGACGGATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTGAC
1 CTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTGAC
* * *
80024 CATTTTATTGCTTCGA-CTTGCTTCTCAGTATCTCATCAGGAAGATGGGGTTCGAAGTTTCGCTC
66 CATTTTATTACTTCGACCTT-CTTCTCAGTATCTCATCAGGAAGATGAGGTTCAAAGTTTCGCTC
80088 AAATTGAGCTTTGTTTCATTGATTTGGTCTA
130 AAATTGAGCTTTGTTTCATTGATTTGGTCTA
* *
80119 CTTCTCTGTATCTTATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGTTGAC
1 CTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTGAC
* * *
80184 CATTTTATTACTTTGACCTTCTTCTCAGTATCTTATCAGTAAGATGAGGTTCAAAGTTTCGCTCA
66 CATTTTATTACTTCGACCTTCTTCTCAGTATCTCATCAGGAAGATGAGGTTCAAAGTTTCGCTCA
* *
80249 CATTGAGCTTTGTTTCATTGATTTGGTTTA
131 AATTGAGCTTTGTTTCATTGATTTGGTCTA
* *
80279 CTTCTCAGTATCTCATCAAGAAGA
1 CTTCTCTGTATCTCATCAGGAAGA
80303 TGATCGCATC
Statistics
Matches: 168, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
160 165 0.98
161 3 0.02
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.38
Consensus pattern (160 bp):
CTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTGAC
CATTTTATTACTTCGACCTTCTTCTCAGTATCTCATCAGGAAGATGAGGTTCAAAGTTTCGCTCA
AATTGAGCTTTGTTTCATTGATTTGGTCTA
Found at i:80314 original size:369 final size:370
Alignment explanation
Indices: 79759--80511 Score: 1219
Period size: 369 Copynumber: 2.0 Consensus size: 370
79749 ATTCTTTGTG
* * * *
79759 TCTCATTAGGAAGACGGATTTGGTGCACTTCTCTATATCTCATCAGGAAGCTGACCATTTTATTG
1 TCTCATCAGGAAGACGAATTTGGTCCACTTCTCTATATCTCATCAGGAAGCTGACCATTTTATTA
* * * * * *
79824 CTTCGATCTGCTTCTCATTATTTCATCAAGAAGCTGGGGTTCGAAGATTTTGCTCACATTGAGCT
66 CTTCGACCTGCTTCTCAGTATTTCATCAAGAAGATGAGGTTCAAAGATTTCGCTCACATTGAGCT
79889 TTGTTTCATTGATTTGGTCTACTTCTCAGTATCTCATCAAGAAGATGACTGCATCACATGTTTTA
131 TTGTTTCATTGATTTGGTCTACTTCTCAGTATCTCATCAAGAAGATGACTGCATCACATGTTTTA
*
79954 ATCCGCTTCTATGTATCTCATCAGGAAGACGGATTTGGTCCACTTCTCAGTATCTCATCAGGAAG
196 ATCCGCTTCTATGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAG
*
80019 CTGACCATTTTATTGCTTCGACTTGCTTCTCAGTATCTCATCAGGAAGATGGGGTTCGAAGTTTC
261 CTGACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGATGGGGTTCGAAGTTTC
**
80084 GCTCAAATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCTGTA
326 GCTCAAATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCAATA
* *
80129 TCTTATCAGGAAGACGAATTTGGTCCACTTCTC-AGTATCTCATCAGGAAGTTGACCATTTTATT
1 TCTCATCAGGAAGACGAATTTGGTCCACTTCTCTA-TATCTCATCAGGAAGCTGACCATTTTATT
* *
80193 ACTTTGACCTTCTTCTCAGTATCTT-ATC-AGTAAGATGAGGTTCAAAG-TTTCGCTCACATTGA
65 ACTTCGACCTGCTTCTCAGTAT-TTCATCAAG-AAGATGAGGTTCAAAGATTTCGCTCACATTGA
*
80255 GCTTTGTTTCATTGATTTGGTTTACTTCTCAGTATCTCATCAAGAAGATGA-TCGCATCACATGT
128 GCTTTGTTTCATTGATTTGGTCTACTTCTCAGTATCTCATCAAGAAGATGACT-GCATCACATGT
*
80319 TTTAATCCGCTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAG
192 TTTAATCCGCTTCTATGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAG
* * *
80384 GAAGCTGACCGTTTTATTGCTTTGACCTGCTTCTCAGTATCTCATCAGGAAGTTGGGGTTCGAAG
257 GAAGCTGACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGATGGGGTTCGAAG
*
80449 TTTCGCTCACATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCAATA
322 TTTCGCTCAAATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCAATA
80498 TCTCATCAGGAAGA
1 TCTCATCAGGAAGA
80512 TGACTGCATC
Statistics
Matches: 354, Mismatches: 25, Indels: 9
0.91 0.06 0.02
Matches are distributed among these distances:
368 1 0.00
369 261 0.74
370 90 0.25
371 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (370 bp):
TCTCATCAGGAAGACGAATTTGGTCCACTTCTCTATATCTCATCAGGAAGCTGACCATTTTATTA
CTTCGACCTGCTTCTCAGTATTTCATCAAGAAGATGAGGTTCAAAGATTTCGCTCACATTGAGCT
TTGTTTCATTGATTTGGTCTACTTCTCAGTATCTCATCAAGAAGATGACTGCATCACATGTTTTA
ATCCGCTTCTATGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAG
CTGACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGATGGGGTTCGAAGTTTC
GCTCAAATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCAATA
Found at i:80479 original size:209 final size:208
Alignment explanation
Indices: 80119--80768 Score: 1093
Period size: 209 Copynumber: 3.1 Consensus size: 208
80109 ATTTGGTCTA
* *
80119 CTTCTCTGTATCTTATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGTTGAC
1 CTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTGAC
* * * * *
80184 CATTTTATTACTTTGACCTTCTTCTCAGTATCTTATCAGTAAGATGAGGTTCAAAGTTTCGCTCA
66 CATTTTATTGCTTTGACCTGCTTCTCAGTATCTTATCAGGAAGTTGGGGTTCAAAGTTTCGCTCA
* *
80249 CATTGAGCTTTGTTTCATTGATTTGGTTTACTTCTCAGTATCTCATCAAGAAGATGATCGCATCA
131 CATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGA-CGCATCA
80314 CATGTTTTAATCCG
195 CATGTTTTAATCCG
80328 CTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTGAC
1 CTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTGAC
* * *
80393 CGTTTTATTGCTTTGACCTGCTTCTCAGTATCTCATCAGGAAGTTGGGGTTCGAAGTTTCGCTCA
66 CATTTTATTGCTTTGACCTGCTTCTCAGTATCTTATCAGGAAGTTGGGGTTCAAAGTTTCGCTCA
*
80458 CATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCAATATCTCATCAGGAAGATGACTGCATCA
131 CATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGAC-GCATCA
*
80523 CATGTTTTACTCCG
195 CATGTTTTAATCCG
* * *
80537 CTTCTCTGTATCTCATCAAGAAGATGAATTTGGTCCACTTCTCAGTATCTCATCAAGAAGCTGAC
1 CTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTGAC
80602 CATTTTATTGCTTTGACCTGCTTCTCAGTATCTTATCAGGAAGTTGGGGTTCAAAGTTTCGCTCA
66 CATTTTATTGCTTTGACCTGCTTCTCAGTATCTTATCAGGAAGTTGGGGTTCAAAGTTTCGCTCA
*
80667 CATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTTAGTATCTCATCAGGAAGATGACCGCATCA
131 CATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGA-CGCATCA
80732 CATGTTTTAATCCG
195 CATGTTTTAATCCG
* *
80746 CTTCTTTATATCTCATCAGGAAG
1 CTTCTCTGTATCTCATCAGGAAG
80769 CTGACCATTT
Statistics
Matches: 413, Mismatches: 26, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
208 1 0.00
209 411 1.00
210 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.38
Consensus pattern (208 bp):
CTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTGAC
CATTTTATTGCTTTGACCTGCTTCTCAGTATCTTATCAGGAAGTTGGGGTTCAAAGTTTCGCTCA
CATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACGCATCAC
ATGTTTTAATCCG
Found at i:80868 original size:172 final size:171
Alignment explanation
Indices: 80574--80939 Score: 590
Period size: 172 Copynumber: 2.1 Consensus size: 171
80564 ATTTGGTCCA
* **
80574 CTTCTC-AGTATCTCATCAAGAAGCTGACCATTTTATTGCTTTGACCTGCTTCTCAGTATCTTAT
1 CTTCTCTA-TATCTCATCAGGAAGCTGACCATTTTATTAATTTGACCTGCTTCTCAGTATCTTAT
* * * *
80638 CAGGAAGTTGGGGTTCAAAGTTTCGCTCACATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTT
65 CAGGAAGCTGAGGTTCAAAGTTTCGCTCACATTGAGCTTTATTTCATTGATTTGGTCTACTTCTC
*
80703 AGTATCTCATCAGGAAGATGACCGCATCACATGTTTTAATCCG
130 AGTATCTCAT-AAGAAGATGACCGCATCACATGTTTTAATCCG
* *
80746 CTTCTTTATATCTCATCAGGAAGCTGACCATTTTATTAATTTGACCTTCTTCTCAGTATCTTATC
1 CTTCTCTATATCTCATCAGGAAGCTGACCATTTTATTAATTTGACCTGCTTCTCAGTATCTTATC
80811 AGGAAGCTGAGGTTCAAAGTTTCGCTCACATTGAGCTTTATTTCATTGATTTGGTCTACTTCTCA
66 AGGAAGCTGAGGTTCAAAGTTTCGCTCACATTGAGCTTTATTTCATTGATTTGGTCTACTTCTCA
*
80876 GTATCTCATAAGAAGATGACCGCATCACATGTTTTAATTCG
131 GTATCTCATAAGAAGATGACCGCATCACATGTTTTAATCCG
* *
80917 CTTCTCTGTATCTTATCAGGAAG
1 CTTCTCTATATCTCATCAGGAAG
80940 ACGGATTTGG
Statistics
Matches: 179, Mismatches: 14, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
171 50 0.28
172 128 0.72
173 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.39
Consensus pattern (171 bp):
CTTCTCTATATCTCATCAGGAAGCTGACCATTTTATTAATTTGACCTGCTTCTCAGTATCTTATC
AGGAAGCTGAGGTTCAAAGTTTCGCTCACATTGAGCTTTATTTCATTGATTTGGTCTACTTCTCA
GTATCTCATAAGAAGATGACCGCATCACATGTTTTAATCCG
Found at i:81075 original size:380 final size:381
Alignment explanation
Indices: 80365--81148 Score: 1259
Period size: 380 Copynumber: 2.1 Consensus size: 381
80355 ATTTGGTCCA
* **
80365 CTTCTC-AGTATCTCATCAGGAAGCTGACCGTTTTATTGCTTTGACCTGCTTCTCAGTATCTCAT
1 CTTCTCTA-TATCTCATCAGGAAGCTGACCATTTTATTAATTTGACCTGCTTCTCAGTATCTCAT
* * * *
80429 CAGGAAGTTGGGGTTCGAAGTTTCGCTCACATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTC
65 CAGGAAGCTGAGGTTCAAAGTTTCGCTCACATTGAGCTTTATTTCATTGATTTGGTCTACTTCTC
* * *
80494 AATATCTCATCAGGAAGATGACTGCATCACATGTTTTACTCCGCTTCTCTGTATCTCATCAAGAA
130 AATATCTCATCAAGAAGATGACCGCATCACATGTTTTAATCCGCTTCTCTGTATCTCATCAAGAA
* * * *
80559 GATGAATTTGGTCCACTTCTCAGTATCTCATCAAGAAGCTGACCATTTTATTGCTTTGACCTGCT
195 GACGAATTTGGTCCACTTCTCAATATCTCATCAAGAAGCTGACCATTTTATTGCTTCGACCTACT
* *
80624 TCTCAGTATCTTATCAGGAAGTTGGGGTTCAAAGTTTCGCTCACATTGAGCTTTGTTTCATTGAT
260 TCTCAGTATCTTATCAGGAAGCTGGGCTTCAAAGTTTCGCTCACATTGAGCTTTGTTTCATTGAT
*
80689 TTGGTCTACTTCTTAGTATCTCATCAGGAAGATGACCGCATCACATGTTTTAATCCG
325 TTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCATCACATGTTTTAATCCG
* * *
80746 CTTCTTTATATCTCATCAGGAAGCTGACCATTTTATTAATTTGACCTTCTTCTCAGTATCTTATC
1 CTTCTCTATATCTCATCAGGAAGCTGACCATTTTATTAATTTGACCTGCTTCTCAGTATCTCATC
80811 AGGAAGCTGAGGTTCAAAGTTTCGCTCACATTGAGCTTTATTTCATTGATTTGGTCTACTTCTCA
66 AGGAAGCTGAGGTTCAAAGTTTCGCTCACATTGAGCTTTATTTCATTGATTTGGTCTACTTCTCA
* * * *
80876 GTATCTCAT-AAGAAGATGACCGCATCACATGTTTTAATTCGCTTCTCTGTATCTTATCAGGAAG
131 ATATCTCATCAAGAAGATGACCGCATCACATGTTTTAATCCGCTTCTCTGTATCTCATCAAGAAG
* * * *
80940 ACGGATTTGGTCCACTTCTCAATATCTCATCAGGAAGCTGACCGTTTTATTGGTTCGACCTACTT
196 ACGAATTTGGTCCACTTCTCAATATCTCATCAAGAAGCTGACCATTTTATTGCTTCGACCTACTT
*
81005 CTCAGTAT-TTCATCAGGAAGCTGGGCTTCGAAGTTTCGCTCACATTGAGCTTTGTTTCATTGAT
261 CTCAGTATCTT-ATCAGGAAGCTGGGCTTCAAAGTTTCGCTCACATTGAGCTTTGTTTCATTGAT
81069 TTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCATCACATGTTTTAATCCG
325 TTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCATCACATGTTTTAATCCG
*
81126 CTTCTCTGTATCTCATCAGGAAG
1 CTTCTCTATATCTCATCAGGAAG
81149 ACTAATTTGG
Statistics
Matches: 370, Mismatches: 31, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
379 2 0.01
380 241 0.65
381 126 0.34
382 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (381 bp):
CTTCTCTATATCTCATCAGGAAGCTGACCATTTTATTAATTTGACCTGCTTCTCAGTATCTCATC
AGGAAGCTGAGGTTCAAAGTTTCGCTCACATTGAGCTTTATTTCATTGATTTGGTCTACTTCTCA
ATATCTCATCAAGAAGATGACCGCATCACATGTTTTAATCCGCTTCTCTGTATCTCATCAAGAAG
ACGAATTTGGTCCACTTCTCAATATCTCATCAAGAAGCTGACCATTTTATTGCTTCGACCTACTT
CTCAGTATCTTATCAGGAAGCTGGGCTTCAAAGTTTCGCTCACATTGAGCTTTGTTTCATTGATT
TGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCATCACATGTTTTAATCCG
Found at i:81093 original size:798 final size:785
Alignment explanation
Indices: 79559--81316 Score: 2194
Period size: 798 Copynumber: 2.2 Consensus size: 785
79549 TTTTACTAAA
* * * ** * * *
79559 AAGACGGATTTGGTTCACTTCTCTGCGTCTCGTCAGGAAGATGACCATTTTATTGCTTCGACCTG
1 AAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTGACCATTTTATTGCTTTGACCTG
* * * * * *
79624 CTTCTCAGTACCTCATCAGGAAGCTGAGGCTCGAAGTTTCTCTCACATCGAGCTTTGGTTTCGTT
66 CTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGTTTCGCTCACATTGAGCTTT-GTTTCATT
* * * * * * * *
79689 GATTTGGTCTACTCCTCAGTACCTCATTAAGAAGACGACCGCATCACCTGTTTTGATCCAATTCT
130 GATTTGGTCTACTTCTCAATATCTCATCAGGAAGATGACTGCATCACATGTTTTGATCCAATTCT
* * * * * * *
79754 TTGTGTCTCATTAGGAAGACGGATTTGGTGCACTTCTCTATATCTCATCAGGAAGCTGACCATTT
195 CTGTATCTCATCAAGAAGACGAATTTGGTCCACTTCTCTATATCTCATCAAGAAGCTGACCATTT
* * * *
79819 TATTGCTTCGATCTGCTTCTCATTATTTCATCAAGAAGCTGGGGTTCGAAGATTTTGCTCACATT
260 TATTGCTTCGACCTGCTTCTCAGTATTTCATCAAGAAGCTGGGGTTCAAAGATTTCGCTCACATT
*
79884 GAGCTTTGTTTCATTGATTTGGTCTACTTCTCAGTATCTCATCAAGAAGATGACTGCATCACATG
325 GAGCTTTGTTTCATTGATTTGGTCTACTTCTCAGTATCTCATCAAGAAGATGACCGCATCACATG
* *
79949 TTTTAATCCGCTTCTATGTATCTCATCAGGAAGACGGATTTGGTCCACTTCTCAGTATCTCATCA
390 TTTTAATCCGCTTCTATATATCTCATCAGGAAGACGGATTTGGACCACTTCTCAGTATCTCATCA
* * ** ** * **
80014 GGAAGCTGACCATTTTATTGCTTCGACTTGCTTCTCAGTATCTCATCAGGAAGATGGGGTTCGAA
455 GGAAGCTGA-CAGTTCAAAGCTTCGACTCACATCTCAGTATCTCAT-AGGAAGATGGACTTCGAA
* * * * ** * *
80079 GTTTCGCTCAAATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCTGTATCTTATCAGGAAGAC
518 GTATCGCTAAAAATGAGC-TCGCATCAATGATTTAGTCTACTTCTCTGTATCTTATCAGGAAGAC
* * * *
80144 GAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGTTGACCATTTTATTACTTTGACCTTCTTCT
582 GAATTTGGTCCACTTCTCAATATCTCATCAGGAAGCTGACCATTTTATTACTTCGACCTACTTCT
*
80209 CAGTATCTTATCAGTAAGATGAGGTTCAAAGTTTCGCTCACATTGAGCTTTGTTTCATTGATTTG
647 CAGTATCTTATCAGGAAGATGAGGTTCAAAGTTTCGCTCACATTGAGCTTTGTTTCATTGATTTG
* *
80274 GTTTACTTCTCAGTATCTCATCAAGAAGATGATCGCATCACATGTTTTAATCCGCTTCTCTGTAT
712 GTCTACTTCTCAGTATCTCATCAAGAAGATGACCGCATCACATGTTTTAATCCGCTTCTCTGTAT
80339 CTCATCAGG
777 CTCATCAGG
*
80348 AAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTGACCGTTTTATTGCTTTGACCTG
1 AAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTGACCATTTTATTGCTTTGACCTG
*
80413 CTTCTCAGTATCTCATCAGGAAGTTGGGGTTCGAAGTTTCGCTCACATTGAGCTTTGTTTCATTG
66 CTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGTTTCGCTCACATTGAGCTTTGTTTCATTG
**
80478 ATTTGGTCTACTTCTCAATATCTCATCAGGAAGATGACTGCATCACATGTTTT-ACTCCGCTTCT
131 ATTTGGTCTACTTCTCAATATCTCATCAGGAAGATGACTGCATCACATGTTTTGA-TCCAATTCT
*
80542 CTGTATCTCATCAAGAAGATGAATTTGGTCCACTTCTC-AGTATCTCATCAAGAAGCTGACCATT
195 CTGTATCTCATCAAGAAGACGAATTTGGTCCACTTCTCTA-TATCTCATCAAGAAGCTGACCATT
* * *
80606 TTATTGCTTTGACCTGCTTCTCAGTATCTT-ATCAGGAAGTTGGGGTTCAAAG-TTTCGCTCACA
259 TTATTGCTTCGACCTGCTTCTCAGTAT-TTCATCAAGAAGCTGGGGTTCAAAGATTTCGCTCACA
* *
80669 TTGAGCTTTGTTTCATTGATTTGGTCTACTTCTTAGTATCTCATCAGGAAGATGACCGCATCACA
323 TTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCAGTATCTCATCAAGAAGATGACCGCATCACA
* ** * *
80734 TGTTTTAATCCGCTTCTTTATATCTCATCAGGAAGCTGACCATTTTATTAATTTGACCTTCTTCT
388 TGTTTTAATCCGCTTCTATATATCTCATCAGGAA---GA-C---GGA-T--TTGGACC-ACTTCT
* * * * * *
80799 CAGTATCTTATCAGGAAGCTGA-GGTTCAAAGTTTCG-CTCACAT-TGAGCTTTATTTCAT-TG-
442 CAGTATCTCATCAGGAAGCTGACAGTTCAAAGCTTCGACTCACATCTCAG---TATCTCATAGGA
** ** * * * *
80859 ATTTGGTCTACTTCTCAGTATCTCATAAGAAGATGA-C-CGCATCACATGTTTTAAT-TCGCTTC
504 AGATGG---ACTTCGAAGTATCGC-TAA-AA-ATGAGCTCGCATCA-ATGATTTAGTCT-ACTTC
* *
80921 TCTGTATCTTATCAGGAAGACGGATTTGGTCCACTTCTCAATATCTCATCAGGAAGCTGACCGTT
561 TCTGTATCTTATCAGGAAGACGAATTTGGTCCACTTCTCAATATCTCATCAGGAAGCTGACCATT
** * *
80986 TTATTGGTTCGACCTACTTCTCAGTAT-TTCATCAGGAAGCTG-GGCTTCGAAGTTTCGCTCACA
626 TTATTACTTCGACCTACTTCTCAGTATCTT-ATCAGGAAGATGAGG-TTCAAAGTTTCGCTCACA
*
81049 TTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCATCACA
689 TTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCAGTATCTCATCAAGAAGATGACCGCATCACA
81114 TGTTTTAATCCGCTTCTCTGTATCTCATCAGG
754 TGTTTTAATCCGCTTCTCTGTATCTCATCAGG
* * *
81146 AAGACTAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTGACCATTTTATTACTTTGACTTG
1 AAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTGACCATTTTATTGCTTTGACCTG
* * * * *
81211 CTTCTCAGTATCTCATAAAGAAGCTGGGGTTCGAAGTTTTGCTCATATTGAGCCTTGTTTCATTG
66 CTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGTTTCGCTCACATTGAGCTTTGTTTCATTG
*
81276 ATTTGGTCTAATTCTCAATATCTCATCAGGAAGATGACTGC
131 ATTTGGTCTACTTCTCAATATCTCATCAGGAAGATGACTGC
81317 CTCGTTTGTT
Statistics
Matches: 835, Mismatches: 107, Indels: 45
0.85 0.11 0.05
Matches are distributed among these distances:
787 106 0.13
788 157 0.19
789 108 0.13
790 2 0.00
791 1 0.00
794 8 0.01
795 6 0.01
796 8 0.01
797 30 0.04
798 403 0.48
799 3 0.00
800 3 0.00
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (785 bp):
AAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTGACCATTTTATTGCTTTGACCTG
CTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGTTTCGCTCACATTGAGCTTTGTTTCATTG
ATTTGGTCTACTTCTCAATATCTCATCAGGAAGATGACTGCATCACATGTTTTGATCCAATTCTC
TGTATCTCATCAAGAAGACGAATTTGGTCCACTTCTCTATATCTCATCAAGAAGCTGACCATTTT
ATTGCTTCGACCTGCTTCTCAGTATTTCATCAAGAAGCTGGGGTTCAAAGATTTCGCTCACATTG
AGCTTTGTTTCATTGATTTGGTCTACTTCTCAGTATCTCATCAAGAAGATGACCGCATCACATGT
TTTAATCCGCTTCTATATATCTCATCAGGAAGACGGATTTGGACCACTTCTCAGTATCTCATCAG
GAAGCTGACAGTTCAAAGCTTCGACTCACATCTCAGTATCTCATAGGAAGATGGACTTCGAAGTA
TCGCTAAAAATGAGCTCGCATCAATGATTTAGTCTACTTCTCTGTATCTTATCAGGAAGACGAAT
TTGGTCCACTTCTCAATATCTCATCAGGAAGCTGACCATTTTATTACTTCGACCTACTTCTCAGT
ATCTTATCAGGAAGATGAGGTTCAAAGTTTCGCTCACATTGAGCTTTGTTTCATTGATTTGGTCT
ACTTCTCAGTATCTCATCAAGAAGATGACCGCATCACATGTTTTAATCCGCTTCTCTGTATCTCA
TCAGG
Found at i:81329 original size:209 final size:208
Alignment explanation
Indices: 80753--81313 Score: 863
Period size: 209 Copynumber: 2.7 Consensus size: 208
80743 CCGCTTCTTT
*
80753 ATATCTCATCAGGAAGCTGACCATTTTATTAATTTGACCTTCTTCTCAGTATCTTATCAGGAAGC
1 ATATCTCATCAGGAAGCTGACCATTTTATTAATTTGA-CTTCTTCTCAGTATCTCATCAGGAAGC
* * *
80818 TGAGGTTCAAAGTTTCGCTCACATTGAGCTTTATTTCATTGATTTGGTCTACTTCTCAGTATCTC
65 TGGGGTTCGAAGTTTCGCTCACATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCAGTATCTC
* * * *
80883 AT-AAGAAGATGACCGCATCACATGTTTTAATTCGCTTCTCTGTATCTTATCAGGAAGACGGATT
130 ATCAGGAAGATGACCGCATCACATGTTTTAATCCGCTTCTCTGTATCTCATCAGGAAGACGAATT
80947 TGGTCCACTTCTCA
195 TGGTCCACTTCTCA
* ** * * *
80961 ATATCTCATCAGGAAGCTGACCGTTTTATTGGTTCGACCTACTTCTCAGTATTTCATCAGGAAGC
1 ATATCTCATCAGGAAGCTGACCATTTTATTAATTTGA-CTTCTTCTCAGTATCTCATCAGGAAGC
*
81026 TGGGCTTCGAAGTTTCGCTCACATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCAGTATCTC
65 TGGGGTTCGAAGTTTCGCTCACATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCAGTATCTC
*
81091 ATCAGGAAGATGACCGCATCACATGTTTTAATCCGCTTCTCTGTATCTCATCAGGAAGACTAATT
130 ATCAGGAAGATGACCGCATCACATGTTTTAATCCGCTTCTCTGTATCTCATCAGGAAGACGAATT
81156 TGGTCCACTTCTCA
195 TGGTCCACTTCTCA
* * * *
81170 GTATCTCATCAGGAAGCTGACCATTTTATTACTTTGACTTGCTTCTCAGTATCTCATAAAGAAGC
1 ATATCTCATCAGGAAGCTGACCATTTTATTAATTTGACTT-CTTCTCAGTATCTCATCAGGAAGC
* * * * *
81235 TGGGGTTCGAAGTTTTGCTCATATTGAGCCTTGTTTCATTGATTTGGTCTAATTCTCAATATCTC
65 TGGGGTTCGAAGTTTCGCTCACATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCAGTATCTC
81300 ATCAGGAAGATGAC
130 ATCAGGAAGATGAC
81314 TGCCTCGTTT
Statistics
Matches: 320, Mismatches: 31, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
208 123 0.38
209 197 0.62
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (208 bp):
ATATCTCATCAGGAAGCTGACCATTTTATTAATTTGACTTCTTCTCAGTATCTCATCAGGAAGCT
GGGGTTCGAAGTTTCGCTCACATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCAGTATCTCA
TCAGGAAGATGACCGCATCACATGTTTTAATCCGCTTCTCTGTATCTCATCAGGAAGACGAATTT
GGTCCACTTCTCA
Found at i:81329 original size:589 final size:587
Alignment explanation
Indices: 79586--81329 Score: 2594
Period size: 589 Copynumber: 3.0 Consensus size: 587
79576 CTTCTCTGCG
* * * * * *
79586 TCTCGTCAGGAAGATGACCATTTTATTGCTTCGACCTGCTTCTCAGTACCTCATCAGGAAGCTGA
1 TCTCATCAGGAAGATGACCATTTTATTACTTTGACCTTCTTCTCAGTATCTTATCAGGAAGCTGA
* * * * * * *
79651 GGCTCGAAGTTTCTCTCACATCGAGCTTTGGTTTCGTTGATTTGGTCTACTCCTCAGTACCTCAT
66 GGTTCAAAGTTTCGCTCACATTGAGCTTT-GTTTCATTGATTTGGTCTACTTCTCAGTATCTCA-
* * * ** * * *
79716 TAAGAAGACGACCGCATCACCTGTTTTGATCCAATTCTTTGTGTCTCATTAGGAAGACGGATTTG
129 TAAGAAGATGACCGCATCACATGTTTTAATCCGCTTCTCTGTATCTCATCAGGAAGACGGATTTG
* * * * *
79781 GTGCACTTCTCTATATCTCATCAGGAAGCTGACCATTTTATTGCTTCGATCTGCTTCTCATTATT
194 GTCCACTTCTCAATATCTCATCAGGAAGCTGACCGTTTTATTGCTTCGACCTGCTTCTCAGTATT
* *
79846 TCATCAAGAAGCTGGGGTTCGAAGATTTTGCTCACATTGAGCTTTGTTTCATTGATTTGGTCTAC
259 TCATCAGGAAGCTGGGGTTCGAAG-TTTCGCTCACATTGAGCTTTGTTTCATTGATTTGGTCTAC
* *
79911 TTCTCAGTATCTCATCAAGAAGATGACTGCATCACATGTTTTAATCCGCTTCTATGTATCTCATC
323 TTCTCAGTATCTCATCAGGAAGATGACTGCATCACATGTTTTAATCCGCTTCTCTGTATCTCATC
** *
79976 AGGAAGACGGATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTGACCATTTTATTGCTTCGAC
388 AGGAAGACTAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTGACCATTTTATTGCTTTGAC
80041 TTGCTTCTCAGTATCTCATCAGGAAGATGGGGTTCGAAGTTTCGCTCAAATTGAGCTTTGTTTCA
453 TTGCTTCTCAGTATCTCATCAGGAAGATGGGGTTCGAAGTTTCGCTCAAATTGAGCTTTGTTTCA
* * * *
80106 TTGATTTGGTCTACTTCTCTGTATCTTATCAGG-A-A-GACG--AATTTG-----GTCCACTTCT
518 TTGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACGCTCATTTGTTTTAATCCACTTCT
80161 CAGTA
583 CAGTA
* * *
80166 TCTCATCAGGAAGTTGACCATTTTATTACTTTGACCTTCTTCTCAGTATCTTATCAGTAAGATGA
1 TCTCATCAGGAAGATGACCATTTTATTACTTTGACCTTCTTCTCAGTATCTTATCAGGAAGCTGA
*
80231 GGTTCAAAGTTTCGCTCACATTGAGCTTTGTTTCATTGATTTGGTTTACTTCTCAGTATCTCATC
66 GGTTCAAAGTTTCGCTCACATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCAGTATCTCAT-
* *
80296 AAGAAGATGATCGCATCACATGTTTTAATCCGCTTCTCTGTATCTCATCAGGAAGACGAATTTGG
130 AAGAAGATGACCGCATCACATGTTTTAATCCGCTTCTCTGTATCTCATCAGGAAGACGGATTTGG
* * *
80361 TCCACTTCTCAGTATCTCATCAGGAAGCTGACCGTTTTATTGCTTTGACCTGCTTCTCAGTATCT
195 TCCACTTCTCAATATCTCATCAGGAAGCTGACCGTTTTATTGCTTCGACCTGCTTCTCAGTATTT
*
80426 CATCAGGAAGTTGGGGTTCGAAGTTTCGCTCACATTGAGCTTTGTTTCATTGATTTGGTCTACTT
260 CATCAGGAAGCTGGGGTTCGAAGTTTCGCTCACATTGAGCTTTGTTTCATTGATTTGGTCTACTT
* * *
80491 CTCAATATCTCATCAGGAAGATGACTGCATCACATGTTTTACTCCGCTTCTCTGTATCTCATCAA
325 CTCAGTATCTCATCAGGAAGATGACTGCATCACATGTTTTAATCCGCTTCTCTGTATCTCATCAG
* *
80556 GAAGA-TGAATTTGGTCCACTTCTCAGTATCTCATCAAGAAGCTGACCATTTTATTGCTTTGACC
390 GAAGACT-AATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTGACCATTTTATTGCTTTGACT
* * * *
80620 TGCTTCTCAGTATCTTATCAGGAAGTTGGGGTTCAAAGTTTCGCTCACATTGAGCTTTGTTTCAT
454 TGCTTCTCAGTATCTCATCAGGAAGATGGGGTTCGAAGTTTCGCTCAAATTGAGCTTTGTTTCAT
* ** *
80685 TGATTTGGTCTACTTCTTAGTATCTCATCAGGAAGATGACCGCATCACATGTTTTAATCCGCTTC
519 TGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGA-CGC-TCATTTGTTTTAATCCACTTC
*
80750 TTTA-TA
582 -TCAGTA
* *
80756 TCTCATCAGGAAGCTGACCATTTTATTAATTTGACCTTCTTCTCAGTATCTTATCAGGAAGCTGA
1 TCTCATCAGGAAGATGACCATTTTATTACTTTGACCTTCTTCTCAGTATCTTATCAGGAAGCTGA
*
80821 GGTTCAAAGTTTCGCTCACATTGAGCTTTATTTCATTGATTTGGTCTACTTCTCAGTATCTCATA
66 GGTTCAAAGTTTCGCTCACATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCAGTATCTCATA
* *
80886 AGAAGATGACCGCATCACATGTTTTAATTCGCTTCTCTGTATCTTATCAGGAAGACGGATTTGGT
131 AGAAGATGACCGCATCACATGTTTTAATCCGCTTCTCTGTATCTCATCAGGAAGACGGATTTGGT
* *
80951 CCACTTCTCAATATCTCATCAGGAAGCTGACCGTTTTATTGGTTCGACCTACTTCTCAGTATTTC
196 CCACTTCTCAATATCTCATCAGGAAGCTGACCGTTTTATTGCTTCGACCTGCTTCTCAGTATTTC
*
81016 ATCAGGAAGCTGGGCTTCGAAGTTTCGCTCACATTGAGCTTTGTTTCATTGATTTGGTCTACTTC
261 ATCAGGAAGCTGGGGTTCGAAGTTTCGCTCACATTGAGCTTTGTTTCATTGATTTGGTCTACTTC
*
81081 TCAGTATCTCATCAGGAAGATGACCGCATCACATGTTTTAATCCGCTTCTCTGTATCTCATCAGG
326 TCAGTATCTCATCAGGAAGATGACTGCATCACATGTTTTAATCCGCTTCTCTGTATCTCATCAGG
*
81146 AAGACTAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTGACCATTTTATTACTTTGACTTG
391 AAGACTAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTGACCATTTTATTGCTTTGACTTG
* * * * * *
81211 CTTCTCAGTATCTCATAAAGAAGCTGGGGTTCGAAGTTTTGCTCATATTGAGCCTTGTTTCATTG
456 CTTCTCAGTATCTCATCAGGAAGATGGGGTTCGAAGTTTCGCTCAAATTGAGCTTTGTTTCATTG
* * *
81276 ATTTGGTCTAATTCTCAATATCTCATCAGGAAGATGACTGCCTCGTTTGTTTTA
521 ATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGAC-G-CTCATTTGTTTTA
81330 GATAACTGTA
Statistics
Matches: 1047, Mismatches: 99, Indels: 27
0.89 0.08 0.02
Matches are distributed among these distances:
578 250 0.24
579 164 0.16
580 82 0.08
581 2 0.00
582 2 0.00
585 3 0.00
588 1 0.00
589 407 0.39
590 134 0.13
591 2 0.00
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (587 bp):
TCTCATCAGGAAGATGACCATTTTATTACTTTGACCTTCTTCTCAGTATCTTATCAGGAAGCTGA
GGTTCAAAGTTTCGCTCACATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCAGTATCTCATA
AGAAGATGACCGCATCACATGTTTTAATCCGCTTCTCTGTATCTCATCAGGAAGACGGATTTGGT
CCACTTCTCAATATCTCATCAGGAAGCTGACCGTTTTATTGCTTCGACCTGCTTCTCAGTATTTC
ATCAGGAAGCTGGGGTTCGAAGTTTCGCTCACATTGAGCTTTGTTTCATTGATTTGGTCTACTTC
TCAGTATCTCATCAGGAAGATGACTGCATCACATGTTTTAATCCGCTTCTCTGTATCTCATCAGG
AAGACTAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTGACCATTTTATTGCTTTGACTTG
CTTCTCAGTATCTCATCAGGAAGATGGGGTTCGAAGTTTCGCTCAAATTGAGCTTTGTTTCATTG
ATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACGCTCATTTGTTTTAATCCACTTCTCAG
TA
Found at i:81977 original size:50 final size:51
Alignment explanation
Indices: 81702--81997 Score: 204
Period size: 50 Copynumber: 6.0 Consensus size: 51
81692 TCTTTTTTTA
** * * * **
81702 AGGTACCGGGTTCGTCGTTGTGGCCTTAA-CCTTTCCCGTCACATCTT-TT
1 AGGTACCGGGTTCACCGTTGCGACCTCAATCCTTTCCTATCACATCTTCTT
* ** * * *
81751 AAGGCACCGAATTTACCGTCGCGACCTCAAT-CTTTCCT-T-TCATCTT-TT
1 -AGGTACCGGGTTCACCGTTGCGACCTCAATCCTTTCCTATCACATCTTCTT
* *
81799 CATGGTACCGGGTTCACCGTTGCGATCTCAATCC-TTCGC-ATCACTTCTTCTT
1 -A-GGTACCGGGTTCACCGTTGCGACCTCAATCCTTTC-CTATCACATCTTCTT
** * * * * *
81851 AGGTACCGGGTTTGCCTTTGCGGCCTCAATCCTTCCCT-TCAAATCTTCAT
1 AGGTACCGGGTTCACCGTTGCGACCTCAATCCTTTCCTATCACATCTTCTT
* * *
81901 -GGTACCGGGTTCACCGTTGCGGCCTTAA-CCTTTCTTATCACATCTTCTT
1 AGGTACCGGGTTCACCGTTGCGACCTCAATCCTTTCCTATCACATCTTCTT
* * *
81950 AGGTACCGGGTTCACCGTTACGACCTTAA-CCTTTTCCT-TCAAATCTTC
1 AGGTACCGGGTTCACCGTTGCGACCTCAATCC-TTTCCTATCACATCTTC
81998 ATGTTTTTCT
Statistics
Matches: 192, Mismatches: 42, Indels: 24
0.74 0.16 0.09
Matches are distributed among these distances:
48 15 0.08
49 61 0.32
50 101 0.53
51 13 0.07
52 2 0.01
ACGTcount: A:0.17, C:0.31, G:0.17, T:0.35
Consensus pattern (51 bp):
AGGTACCGGGTTCACCGTTGCGACCTCAATCCTTTCCTATCACATCTTCTT
Found at i:81989 original size:99 final size:98
Alignment explanation
Indices: 81703--82000 Score: 303
Period size: 99 Copynumber: 3.0 Consensus size: 98
81693 CTTTTTTTAA
** * * * **
81703 GGTACCGGGTTCGTCGTTGTGGCCTTAACCTTTCCCGTCACATCTT-TTAAGGCACCGAATTTAC
1 GGTACCGGGTTCACCGTTGCGGCCTTAACCTTTCCCATCACATCTTCTT-AGGTACCGGGTTTAC
* * ** *
81767 CGTCGCGACCTCAATCTTTCCTTTCATCTTTTCAT
65 CGTTGCGACCTCAACCTTTCC-TTCAAATCTTCAT
** * * * *
81802 GGTACCGGGTTCACCGTTGCGATCTCAATCC-TTCGCATCACTTCTTCTTAGGTACCGGGTTTGC
1 GGTACCGGGTTCACCGTTGCGGCCTTAA-CCTTTCCCATCACATCTTCTTAGGTACCGGGTTTAC
* * *
81866 CTTTGCGGCCTCAATCCTTCCCTTCAAATCTTCAT
65 CGTTGCGACCTCAA-CCTTTCCTTCAAATCTTCAT
** *
81901 GGTACCGGGTTCACCGTTGCGGCCTTAACCTTTCTTATCACATCTTCTTAGGTACCGGGTTCACC
1 GGTACCGGGTTCACCGTTGCGGCCTTAACCTTTCCCATCACATCTTCTTAGGTACCGGGTTTACC
* *
81966 GTTACGACCTTAACCTTTTCCTTCAAATCTTCAT
66 GTTGCGACCTCAACC-TTTCCTTCAAATCTTCAT
82000 G
1 G
82001 TTTTTCTTAG
Statistics
Matches: 160, Mismatches: 34, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
98 4 0.03
99 147 0.92
100 9 0.06
ACGTcount: A:0.16, C:0.31, G:0.17, T:0.35
Consensus pattern (98 bp):
GGTACCGGGTTCACCGTTGCGGCCTTAACCTTTCCCATCACATCTTCTTAGGTACCGGGTTTACC
GTTGCGACCTCAACCTTTCCTTCAAATCTTCAT
Found at i:82965 original size:5 final size:5
Alignment explanation
Indices: 82955--83040 Score: 61
Period size: 5 Copynumber: 16.8 Consensus size: 5
82945 TCGACCTCTC
* * *
82955 CTTTT CTTTT CTTTT -TTTT CCTTTT -TTCT ATTTT CTTTTT CCTTT -TTTT
1 CTTTT CTTTT CTTTT CTTTT -CTTTT CTTTT CTTTT C-TTTT CTTTT CTTTT
* *
83004 CTTTTT CTTTT CCTTTC CTTTT TTCTTT CTTTT CTTT
1 C-TTTT CTTTT -CTTTT CTTTT CT-TTT CTTTT CTTT
83041 ATTTATTTTT
Statistics
Matches: 64, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
4 10 0.16
5 32 0.50
6 22 0.34
ACGTcount: A:0.01, C:0.21, G:0.00, T:0.78
Consensus pattern (5 bp):
CTTTT
Found at i:82993 original size:21 final size:20
Alignment explanation
Indices: 82969--83019 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 20
82959 TCTTTTCTTT
82969 TTTTTCCTTTTTTCTATTTTC
1 TTTTTCCTTTTTTCT-TTTTC
82990 TTTTTCCTTTTTTTCTTTTTC
1 TTTTTCC-TTTTTTCTTTTTC
83011 -TTTTCCTTT
1 TTTTTCCTTT
83020 CCTTTTTTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 3 0.10
20 6 0.21
21 12 0.41
22 8 0.28
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTTTCCTTTTTTCTTTTTC
Found at i:83015 original size:33 final size:33
Alignment explanation
Indices: 82956--83040 Score: 84
Period size: 33 Copynumber: 2.5 Consensus size: 33
82946 CGACCTCTCC
* * *
82956 TTTTCTTTTCTTTT-TTTTCCTTTTTTCTATTTTCT
1 TTTTCCTTTCTTTTCTTTT--TCTTTTC-ATTTCCT
*
82991 TTTTCCTTT-TTTTCTTTTTCTTTTCCTTTCCT
1 TTTTCCTTTCTTTTCTTTTTCTTTTCATTTCCT
*
83023 TTTTTCTTTCTTTTCTTT
1 TTTTCCTTTCTTTTCTTT
83041 ATTTATTTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
32 13 0.30
33 14 0.33
34 4 0.09
35 12 0.28
ACGTcount: A:0.01, C:0.20, G:0.00, T:0.79
Consensus pattern (33 bp):
TTTTCCTTTCTTTTCTTTTTCTTTTCATTTCCT
Found at i:83037 original size:22 final size:21
Alignment explanation
Indices: 82956--83036 Score: 85
Period size: 22 Copynumber: 3.7 Consensus size: 21
82946 CGACCTCTCC
82956 TTTTCTTTTCTTTTTTTTCCTT
1 TTTTCTTTTC-TTTTTTTCCTT
*
82978 TTTTCTATTT-TCTTTTTCCTTT
1 TTTTCT-TTTCTTTTTTTCC-TT
83000 TTTTCTTTTTCTTTTCCTTTCCTT
1 TTTTC-TTTTCTTTT--TTTCCTT
83024 TTTTC-TTTCTTTT
1 TTTTCTTTTCTTTT
83037 CTTTATTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 12
0.78 0.03 0.18
Matches are distributed among these distances:
21 8 0.16
22 24 0.47
23 7 0.14
24 7 0.14
25 5 0.10
ACGTcount: A:0.01, C:0.20, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTTCTTTTCTTTTTTTCCTT
Found at i:83964 original size:11 final size:10
Alignment explanation
Indices: 83938--83989 Score: 59
Period size: 10 Copynumber: 4.9 Consensus size: 10
83928 TATCTTGACC
83938 CTTTTTTATTT
1 CTTTTTT-TTT
*
83949 GTTTTGTTTTT
1 CTTTT-TTTTT
83960 CTTTTTTTTTT
1 C-TTTTTTTTT
*
83971 CTTTTTCTTT
1 CTTTTTTTTT
83981 CTTTTTTTT
1 CTTTTTTTT
83990 AAACACTTCG
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
10 16 0.46
11 13 0.37
12 6 0.17
ACGTcount: A:0.02, C:0.10, G:0.04, T:0.85
Consensus pattern (10 bp):
CTTTTTTTTT
Found at i:83970 original size:17 final size:18
Alignment explanation
Indices: 83950--83988 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
83940 TTTTTATTTG
*
83950 TTTTGTTTTTCTTT-TTT
1 TTTTCTTTTTCTTTCTTT
83967 TTTTCTTTTTCTTTCTTT
1 TTTTCTTTTTCTTTCTTT
83985 TTTT
1 TTTT
83989 TAAACACTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.00, C:0.10, G:0.03, T:0.87
Consensus pattern (18 bp):
TTTTCTTTTTCTTTCTTT
Found at i:87761 original size:30 final size:29
Alignment explanation
Indices: 87695--87788 Score: 102
Period size: 29 Copynumber: 3.2 Consensus size: 29
87685 CAAAAATACG
** **
87695 ATTTTTGGATGCTCGAGGGTAAAACAGTA
1 ATTTTTGGACACTCGAGGGTAAAATGGTA
*
87724 A-TTTTGGACACTTCGAGGGTGAAATGGTA
1 ATTTTTGGACAC-TCGAGGGTAAAATGGTA
*
87753 ATTTTTGGACACTC-AGGAGCAAAATGGTA
1 ATTTTTGGACACTCGAGG-GTAAAATGGTA
87782 ATTTTTG
1 ATTTTTG
87789 AAAGTTTGAG
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
28 11 0.20
29 34 0.62
30 10 0.18
ACGTcount: A:0.30, C:0.11, G:0.27, T:0.33
Consensus pattern (29 bp):
ATTTTTGGACACTCGAGGGTAAAATGGTA
Found at i:87805 original size:29 final size:29
Alignment explanation
Indices: 87773--88041 Score: 178
Period size: 30 Copynumber: 9.1 Consensus size: 29
87763 ACTCAGGAGC
87773 AAAATGGTAATTTTTGAAAGTTTGAGGGTA
1 AAAAT-GTAATTTTTGAAAGTTTGAGGGTA
* *
87803 AAAATATAATTATTAGAAAGTTT-AGGGGTA
1 AAAATGTAATT-TTTGAAAGTTTGA-GGGTA
**
87833 AAAATGTAATTTACGTAAAGTTTGAGGGTA
1 AAAATGTAATTTTTG-AAAGTTTGAGGGTA
* * *
87863 AAAATATAATTTTTTAAAGTTTG-GGG-C
1 AAAATGTAATTTTTGAAAGTTTGAGGGTA
*** *
87890 AAAATGTAA-TTTTGTAAA-TTTCTTTGGCA
1 AAAATGTAATTTTTG-AAAGTTT-GAGGGTA
* *
87919 AAAATGTAATTTTTGTAAAATTT-AGGGGTT
1 AAAATGTAATTTTTG-AAAGTTTGA-GGGTA
* * *
87949 AAAATGTGA-TTTTGAAAAAATTTG-GGGTT
1 AAAATGTAATTTTTG--AAAGTTTGAGGGTA
* *
87978 AAAATATAATTTTTAGAAAGTTT-AGTGGTC
1 AAAATGTAATTTTT-GAAAGTTTGAG-GGTA
* *
88008 AAAATATAATTTTTGGAAAGTTTGAGGGTC
1 AAAATGTAATTTTT-GAAAGTTTGAGGGTA
88038 AAAA
1 AAAA
88042 CATGATTTTT
Statistics
Matches: 195, Mismatches: 26, Indels: 36
0.76 0.10 0.14
Matches are distributed among these distances:
26 7 0.04
27 11 0.06
28 5 0.03
29 49 0.25
30 116 0.59
31 7 0.04
ACGTcount: A:0.39, C:0.02, G:0.20, T:0.38
Consensus pattern (29 bp):
AAAATGTAATTTTTGAAAGTTTGAGGGTA
Found at i:87844 original size:59 final size:59
Alignment explanation
Indices: 87772--88050 Score: 239
Period size: 59 Copynumber: 4.7 Consensus size: 59
87762 CACTCAGGAG
87772 CAAAATGGTAATTTTTG-AAAGTTTGAGGGTAAAAATATAATTATTAGAAAGTTTAGGGGT
1 CAAAAT-GTAATTTTTGAAAAGTTTGAGGGTAAAAATATAATT-TTAGAAAGTTTAGGGGT
* ** * **
87832 AAAAATGTAATTTACGTAAAGTTTGAGGGTAAAAATATAATTTTTTAAAGTTT-GGGG-
1 CAAAATGTAATTTTTGAAAAGTTTGAGGGTAAAAATATAATTTTAGAAAGTTTAGGGGT
* *** * * * *
87889 CAAAATGTAA-TTTTGTAAA-TTTCTTTGGCAAAAATGTAATTTTTGTAAAATTTAGGGGT
1 CAAAATGTAATTTTTGAAAAGTTT-GAGGGTAAAAATATAATTTTAG-AAAGTTTAGGGGT
* * * * *
87948 TAAAATGTGA-TTTTGAAAAAATTTG-GGGTTAAAATATAATTTTTAGAAAGTTTAGTGGT
1 CAAAATGTAATTTTTG-AAAAGTTTGAGGGTAAAAATATAA-TTTTAGAAAGTTTAGGGGT
* * * * *
88007 CAAAATATAATTTTTGGAAAGTTTGAGGGTCAAAACATGATTTT
1 CAAAATGTAATTTTTGAAAAGTTTGAGGGTAAAAATATAATTTT
88051 TGGAAAATTC
Statistics
Matches: 175, Mismatches: 34, Indels: 21
0.76 0.15 0.09
Matches are distributed among these distances:
55 3 0.02
56 23 0.13
57 15 0.09
58 8 0.05
59 69 0.39
60 54 0.31
61 3 0.02
ACGTcount: A:0.39, C:0.03, G:0.20, T:0.38
Consensus pattern (59 bp):
CAAAATGTAATTTTTGAAAAGTTTGAGGGTAAAAATATAATTTTAGAAAGTTTAGGGGT
Done.