Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005574.1 Kokia drynarioides strain JFW-HI SEQ_119692, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 616

Length: 1028
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.37


Found at i:451 original size:17 final size:17

Alignment explanation


    Indices: 429--485  Score: 87
    Period size: 17  Copynumber: 3.4  Consensus size: 17

        419 TGGATTTTTC

                     *    *  
        429 TAAATTTAATTTTATAA
          1 TAAATTTAAATTTAAAA

                             
        446 TAAATTTAAATTTAAAA
          1 TAAATTTAAATTTAAAA

                *            
        463 TAAACTTAAATTTAAAA
          1 TAAATTTAAATTTAAAA

                  
        480 TAAATT
          1 TAAATT

        486 CAATTTCCAA


Statistics
Matches: 36,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  17   36  1.00

ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44


Consensus pattern (17 bp):   
TAAATTTAAATTTAAAA
Done.