Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005575.1 Kokia drynarioides strain JFW-HI SEQ_119694, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6541
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34


Found at i:2643 original size:18 final size:18

Alignment explanation


    Indices: 2594--2643  Score: 54
    Period size: 16  Copynumber: 2.9  Consensus size: 18

       2584 AAACCCAACC

                              
       2594 TATTTTT-TAAATT-TGT
          1 TATTTTTATAAATTATGT

            *                  
       2610 AATATTTTAT--ATTATGT
          1 TAT-TTTTATAAATTATGT

                             
       2627 TATTTTTATAAATTATG
          1 TATTTTTATAAATTATG

       2644 AAAATTATAA


Statistics
Matches: 27,  Mismatches: 2, Indels: 8
        0.73            0.05        0.22

Matches are distributed among these distances:
  16   11  0.41
  17    9  0.33
  18    7  0.26

ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62


Consensus pattern (18 bp):   
TATTTTTATAAATTATGT
Done.