Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01005579.1 Kokia drynarioides strain JFW-HI SEQ_119698, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  185887

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5016--5061
24
2.0
23
87
12
67
73
4
8
13
1.21
5048--5099
20
2.5
20
87
9
70
78
0
19
1
0.84
5056--5093
14
2.7
14
84
11
51
78
0
18
2
0.86
6032--6196
50
3.3
50
89
0
249
36
18
24
21
1.95
6259--6401
47
3.0
47
85
2
198
32
25
13
29
1.93
6251--6877
80
7.7
81
81
7
499
32
23
16
27
1.96
6385--6956
39
14.4
39
77
8
408
32
22
17
27
1.96
6353--6899
160
3.4
157
80
6
566
33
22
17
26
1.96
6385--6899
200
2.6
198
84
4
637
33
22
17
26
1.96
22667--22699
6
5.8
6
86
13
52
84
0
15
0
0.61
22667--22700
16
2.1
17
94
5
61
82
0
17
0
0.67
28729--28770
21
2.2
19
83
12
50
47
2
4
45
1.36
29405--29455
25
2.0
25
100
0
102
39
3
7
49
1.51
43408--43540
66
2.0
66
98
0
257
32
6
4
57
1.43
43434--43571
66
2.1
66
82
2
161
37
5
4
52
1.43
59173--59243
30
2.4
30
81
6
81
42
1
1
54
1.17
59080--59330
95
2.7
94
88
1
342
37
4
4
53
1.42
59413--59458
15
2.9
16
75
15
51
21
8
8
60
1.53
59732--60194
231
2.0
231
98
0
890
39
10
13
36
1.79
72728--72754
2
13.5
2
100
0
54
51
0
48
0
1.00
77619--77656
15
2.4
17
82
8
53
42
5
0
52
1.24
80659--80727
32
2.1
34
84
10
90
27
15
14
42
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90877--90910
16
2.1
16
89
10
52
38
0
5
55
1.24
91974--92236
58
4.5
57
81
7
226
39
1
25
33
1.65
91890--92226
29
11.6
29
73
12
194
39
3
25
32
1.72
93981--94074
6
16.0
6
73
16
72
53
3
1
42
1.24
93981--94074
18
5.3
18
81
8
104
53
3
1
42
1.24
94778--94851
38
1.9
39
84
13
100
58
6
0
35
1.25
94778--94855
39
2.0
40
82
12
99
57
6
0
35
1.24
99715--99767
23
2.4
23
84
6
65
58
1
1
37
1.20
101302--101334
16
1.9
18
88
11
52
6
42
0
51
1.26
122751--122789
20
2.0
20
84
0
51
33
12
0
53
1.39
130377--130415
13
2.9
13
84
3
51
33
5
25
35
1.78
141806--141850
23
2.0
23
86
0
63
31
13
20
35
1.91
146060--146086
2
13.5
2
100
0
54
48
0
0
51
1.00
147626--147689
28
2.4
25
79
10
65
57
10
4
26
1.52
149916--150096
90
2.0
90
100
0
362
34
14
16
34
1.89
152230--152268
9
4.3
9
83
0
51
51
12
7
28
1.67
152230--152268
18
2.2
18
90
0
60
51
12
7
28
1.67
152406--152474
34
2.0
34
94
0
120
28
18
0
52
1.46
162422--162470
24
2.0
24
84
0
62
24
10
12
53
1.69
184990--185199
103
2.0
104
85
2
280
30
18
16
35
1.93

Tables:   1

The End!