Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005581.1 Kokia drynarioides strain JFW-HI SEQ_119700, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 691

Length: 1152
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.28


Found at i:562 original size:13 final size:12

Alignment explanation


    Indices: 540--582  Score: 52
    Period size: 13  Copynumber: 3.4  Consensus size: 12

        530 TTTTACCCAA

                          
        540 AAAAAGAAAAAATG
          1 AAAAA-AAAAAA-G

                        
        554 -AAAAAAAAAAG
          1 AAAAAAAAAAAG

                         
        565 AAAAAAAGAAAAG
          1 AAAAAAA-AAAAG

                 
        578 AAAAA
          1 AAAAA

        583 GGAGAGGTCG


Statistics
Matches: 27,  Mismatches: 0, Indels: 5
        0.84            0.00        0.16

Matches are distributed among these distances:
  11    1  0.04
  12   12  0.44
  13   14  0.52

ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02


Consensus pattern (12 bp):   
AAAAAAAAAAAG

Found at i:562 original size:19 final size:19

Alignment explanation


    Indices: 538--583  Score: 74
    Period size: 19  Copynumber: 2.4  Consensus size: 19

        528 GATTTTACCC

                          *    
        538 AAAAAAAGAAAAAATGAAA
          1 AAAAAAAGAAAAAAAGAAA

                               
        557 AAAAAAAGAAAAAAAGAAA
          1 AAAAAAAGAAAAAAAGAAA

             *      
        576 AGAAAAAG
          1 AAAAAAAG

        584 GAGAGGTCGA


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  19   25  1.00

ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02


Consensus pattern (19 bp):   
AAAAAAAGAAAAAAAGAAA
Done.