Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005583.1 Kokia drynarioides strain JFW-HI SEQ_119702, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 623

Length: 1039
ACGTcount: A:0.32, C:0.20, G:0.09, T:0.40


Found at i:131 original size:26 final size:24

Alignment explanation


    Indices: 91--138  Score: 62
    Period size: 26  Copynumber: 1.9  Consensus size: 24

         81 TCTAGATTGG

                                      
         91 CATAATTTCTCATATTCATCATTTCT
          1 CATAATTTCTCATA-TCA-CATTTCT

                                   
        117 CATAATTTCAT-ATATCACATTT
          1 CATAATTTC-TCATATCACATTT

        139 ACATTTCTCT


Statistics
Matches: 21,  Mismatches: 0, Indels: 4
        0.84            0.00        0.16

Matches are distributed among these distances:
  24    5  0.24
  25    3  0.14
  26   12  0.57
  27    1  0.05

ACGTcount: A:0.31, C:0.21, G:0.00, T:0.48


Consensus pattern (24 bp):   
CATAATTTCTCATATCACATTTCT
Done.