genome.fa.s5587.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01005587.1 Kokia drynarioides strain JFW-HI SEQ_119710, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137127

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4099--4216	59	2.0	59	96	0	218	36	12	11	39	1.79
12084--12113	15	1.9	16	93	6	53	53	13	6	26	1.64
12750--12779	15	2.0	15	93	0	51	16	16	0	66	1.25
24100--24151	25	2.1	25	100	0	104	19	17	15	48	1.82
39178--39381	48	4.2	48	78	1	194	32	12	19	35	1.89
39206--39382	96	1.8	95	82	7	223	31	14	18	36	1.90
50583--50630	20	2.4	20	100	0	96	31	29	10	29	1.90
59545--59649	40	2.6	41	85	5	135	40	18	19	21	1.91
59625--59757	42	3.2	42	82	6	164	42	12	26	19	1.86
59616--59743	42	3.1	42	84	3	170	43	13	25	17	1.85
66259--66357	39	2.5	40	91	3	164	30	18	21	30	1.97
67581--67699	43	2.8	43	84	5	159	31	17	26	24	1.97
68144--68273	66	2.0	66	100	0	260	36	20	7	34	1.82
70822--70879	11	6.3	9	81	16	50	55	0	0	44	0.99
70818--70856	20	2.0	20	94	0	69	51	0	0	48	1.00
70818--70863	11	4.4	11	86	10	69	52	0	0	47	1.00
70922--70948	6	4.5	6	100	0	54	0	62	0	37	0.95
71669--71748	41	2.0	41	87	0	115	46	27	16	10	1.78
71828--71876	16	3.2	16	72	16	59	42	0	0	57	0.99
71822--71884	29	2.2	29	97	0	117	52	0	0	47	1.00
71822--71895	29	2.7	28	90	10	102	51	0	0	48	1.00
77547--77597	26	2.0	26	100	0	102	31	17	15	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78218--78250	15	2.2	15	89	10	50	27	0	0	72	0.85
80840--80882	20	2.1	21	86	4	61	18	6	6	67	1.37
81014--81146	67	2.0	67	87	0	194	35	19	16	28	1.94
87767--87798	16	2.1	16	94	5	57	75	0	25	0	0.81
93898--93951	19	2.8	19	81	10	74	18	35	22	24	1.96
100538--100656	27	4.4	27	94	0	211	23	30	23	22	1.99
100534--100656	54	2.3	54	98	0	237	23	30	23	21	1.99
106070--106109	15	2.9	15	82	10	50	10	15	5	70	1.32
109067--109113	25	1.9	24	87	12	69	72	0	21	6	1.07
111232--111285	18	3.1	17	76	10	56	33	16	24	25	1.96
113439--113471	14	2.3	15	89	5	50	57	9	0	33	1.30
113868--114025	79	2.1	77	90	4	248	37	18	8	36	1.81
115715--115746	14	2.3	14	94	0	55	31	0	9	59	1.29
116159--116674	258	2.0	258	98	0	996	36	6	17	39	1.76
120442--120555	18	6.3	18	77	1	93	27	19	16	36	1.93
120450--120573	36	3.4	36	77	4	115	29	18	17	33	1.94
120524--120722	19	10.1	19	73	10	80	33	16	24	25	1.96
120524--120648	38	3.3	38	74	6	94	33	14	24	28	1.94
120588--120655	19	3.6	19	85	0	82	32	14	30	22	1.94
120602--120742	64	2.2	64	83	0	165	31	19	24	24	1.98
123847--123964	19	6.2	19	76	3	103	21	26	19	33	1.97
128723--128833	19	5.8	19	81	0	114	22	27	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128789--128944	18	8.6	18	82	0	141	33	23	19	23	1.97
132251--132338	18	4.8	18	79	6	97	34	23	19	22	1.97
132265--132353	36	2.4	36	78	12	92	37	20	19	23	1.94
132251--132353	18	5.6	18	79	6	82	33	22	19	24	1.97

Tables:   1

The End!